ABOUT THIS RECORDspecies: Medicago truncatula
miRNA family: MIR2118
source: miRBase, original name: mtr-MIR2118 (MI0010858)
Taxonomy by NCBI:
Medicago truncatula Medicago Trifolieae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTACCGATTCCACCCATTCCTA miRNA* GGATATGGGAGGATCGGTAAAA mismatches: 1 bulges: 2 |
pre-miRNA
AGAGAGAGAAAGGGAAAGGGTGAAAGAGCTTGAGGAAGTTATGGGATATGGGAGGATCGGTAAAACAGATCTAATTCATCTGAATTGAATAATTTCTTTA
CCGATTCCACCCATTCCTATTATTTCCTTTTGTTCCTCTCTTTCCACTCTCCTCTCCAT
dot-bracket secondary structure
.(((((.((.((((((((((.(...((((..((((((((.((((((.(((((.((((((((((..(((((.......)))))....(((....))).)))
)))).))).))))))))))).))))))))..))))).)))))))).)).)))))))...
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
degradome data
download this record
evidence: 454, Northern
references
[1] Jagadeeswaran G, Zheng Y, Li YF, Shukla LI, Matts J, Hoyt P, Macmil SL, Wiley GB, Roe BA, Zhang W, Sunkar R, New Phytol. 184:85-98(2009)., "Cloning and characterization of small RNAs from Medicago truncatula reveals four novel legume-specific microRNA families"
AGAGAGAGAAAGGGAAAGGGTGAAAGAGCTTGAGGAAGTTATGGGATATGGGAGGATCGGTAAAACAGATCTAATTCATCTGAATTGAATAATTTCTTTA
CCGATTCCACCCATTCCTATTATTTCCTTTTGTTCCTCTCTTTCCACTCTCCTCTCCAT
dot-bracket secondary structure
.(((((.((.((((((((((.(...((((..((((((((.((((((.(((((.((((((((((..(((((.......)))))....(((....))).)))
)))).))).))))))))))).))))))))..))))).)))))))).)).)))))))...
SIMILARITIES| miRBase pvu-MIR2118: 0.000000000000009 PMRD mtr-miR2118: 2e-21 microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
degradome data
download this record
evidence: 454, Northern
references
[1] Jagadeeswaran G, Zheng Y, Li YF, Shukla LI, Matts J, Hoyt P, Macmil SL, Wiley GB, Roe BA, Zhang W, Sunkar R, New Phytol. 184:85-98(2009)., "Cloning and characterization of small RNAs from Medicago truncatula reveals four novel legume-specific microRNA families"
