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ABOUT THIS RECORD

ID: MNEST040782
species: Medicago truncatula
miRNA family: MIR2585
source: miRBase, original name: mtr-MIR2585c (MI0011869)

Taxonomy by NCBI:
Medicago truncatula Medicago Trifolieae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 CAGGATTAGCGATTACAGGGAC

miRNA*
 CCCTGGTATTCGCTAATCCTGGC

mismatches: 1
bulges: 1
View larger
pre-miRNA
 TGGGGGTGGTTTAAAAATTGGTCCCTGGTATTCGCTAATCCTGGCAAACTAGCCTTGCAATCATTAATCATTTAAAATTTAGTCCTTTGACCAACTTAAT
CACTGCCACGTCACTAATTTGATGATGTGGCAATCACTGCCAAACATGAAATTCCAATTTTGCCCTTAAGAAGAGGACAAAATATTGAAAAAGGATTGGA
AATCCTGGGGTAAAATTGGAATTTCATGTGGCGTGGCAATGATTAAGTGGGGAGATGGACGAAATTTTAAATGATTAAACAATGCAGGGGTAAATTGCCA
GGATTAGCGATTACAGGGACCAATTTTTAAACGACCCCT

dot-bracket secondary structure
.((((((.(((((((((((((((((((.((.((((((((((((((((..((.(((((((....(((((((((((((((((.((((.((..((.(((((((
((.(((((((((...............(((((.....))))).((((((((((((((((((((((............(((....)))....(((((....
.))))).))))))))))))))))))))))))))))))).))))))))).))..)).)))).)))))))))))))))))....))))))).))..))))))
)))))))))).))))))))))))))))))))).))))))


SIMILARITIES
miRBase mtr-MIR2585a: 5e-129

PMRD no hits

microPC no hits		UniProt no hits

RFAM no hits

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454

references
[1] Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M, Plant Cell. 21:2780-2796(2009)., "Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules"



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