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ABOUT THIS RECORD
ID:
MNEST040788
species:
Medicago truncatula
miRNA family:
MIR2587
source:
miRBase, original name:
mtr-MIR2587c
(
MI0011801
)
Taxonomy by NCBI:
Medicago truncatula
Medicago
Trifolieae
Papilionoideae
Fabaceae
Fabales
fabids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TTGACCGTTCATATGAACCCTG
miRNA*
GGGTTCATATAACGGTCAATA
mismatches:
2
bulges:
1
View larger
pre-miRNA
CGATGGTGTCATGGTCATTG
TTGACCGTTCATATGAACCCTG
CAATTGCAATGCATTTTAACTTGTGTG
GGGTTCATATAACGGTCAATA
GAGACCCTTG
ACATAAAAGA
dot-bracket secondary structure
.....((((((.((((.(((
(((((((((.((((((((((..
((..(((...)))..........))..
)))))))))))))))))))))
).))))..))
))))......
SIMILARITIES
miRBase
mtr-MIR2587a
:
6e-58
PMRD
no hits
microPC
no hits
UniProt
no hits
RFAM
MIR2587: 3e-32
Identical with:
mtr-MIR2587a
from miRBase (
MNEST040786
)
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
additional data
download this record
evidence:
454
references
[
1
] Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M,
Plant Cell. 21:2780-2796(2009).
,
"Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules"