ABOUT THIS RECORDspecies: Medicago truncatula
miRNA family: MIR2594
source: miRBase, original name: mtr-MIR2594b (MI0011831)
Taxonomy by NCBI:
Medicago truncatula Medicago Trifolieae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CCATGGCCAAGGATGCCAGAG miRNA* CTGTAGTTCCTTCGGCGATGTTG mismatches: 6 bulges: 2 |
pre-miRNA
CCGCTTCTCAGTGCTGCTGTAGTTCCTTCGGCGATGTTGCTCACCATGGCCAAGGATGCCAGAGGCACTTCTACTCCGT
dot-bracket secondary structure
.........((((((.(((....(((((.(((.(((........))).))))))))...))).))))))..........
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M, Plant Cell. 21:2780-2796(2009)., "Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules"
CCGCTTCTCAGTGCTGCTGTAGTTCCTTCGGCGATGTTGCTCACCATGGCCAAGGATGCCAGAGGCACTTCTACTCCGT
dot-bracket secondary structure
.........((((((.(((....(((((.(((.(((........))).))))))))...))).))))))..........
SIMILARITIES| miRBase mtr-MIR2594a: 1e-39 PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
Identical with: mtr-MIR2594a from miRBase (MNEST040824) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M, Plant Cell. 21:2780-2796(2009)., "Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules"
