miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Back to search results



ABOUT THIS RECORD

ID: MNEST040836
species: Medicago truncatula
miRNA family: MIR2604
source: miRBase, original name: mtr-MIR2604 (MI0011855)

Taxonomy by NCBI:
Medicago truncatula Medicago Trifolieae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TAATTTTTATGTGGGAGTGTT

miRNA*
CACTCCCACATAAAAACTAGT

mismatches: 1
bulges: 0

View larger
pre-miRNA
GTTTGCTAGAACACATCCACTAATTTTTATGTGGGAGTGTTTTAGCAAAGCTATAACTTAGAGTGTATTTAACCACTGTTTAGTTATTTATTTGCTAAAA
TACTCCTTCTAAAAAATAAGTGGGTGTATTCTAGCAAATGCCTATAAGATTTGCTAGAACACACCCACTTGTTTTTTTAGAAAGTGTGTTATAGCAACAT
ACACCTTAAGGTGTATTTATTAATTTTTTAGTTATAACTTGCTAAAACACTCCCACATAAAAACTAGTGGGTGTGTTCTAGAAAATT


dot-bracket secondary structure
((((.(((((((((((((((((.(((((((((((((((((((((((((.(.(((((((...((((........))))..(((((.......((((((.((
(((.(.(((((((((((((((((((((.(((((((((((.........))))))))))).))))))))))).)))))))))).).))))).)))))).((
(((((....)))))))..)))))......))))))).)))))))))))))))))))))))))).))))))))))))))))).)))).



SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits
UniProt no hits

RFAM no hits

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454

references

[1] Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M, Plant Cell. 21:2780-2796(2009)., "Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules"




Liczniki na strone;