miRNEST 2.0, an integrative microRNA resource :: Browse
Home
Browse miRNAs
Deep-seq predictions
Mirtrons
miRNA genes
Degradomes
Download
Upload
Contact
Back to search results
ABOUT THIS RECORD
ID:
MNEST040861
species:
Medicago truncatula
miRNA family:
MIR2618
source:
miRBase, original name:
mtr-MIR2618b
(
MI0011885
)
Taxonomy by NCBI:
Medicago truncatula
Medicago
Trifolieae
Papilionoideae
Fabaceae
Fabales
fabids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
GTGAATTCAGTTTACGTACGTT
miRNA*
TGTACGAATTTGGGTTGCATTC
mismatches:
2
bulges:
2
View larger
pre-miRNA
AGCATGTACCA
TGTACGAATTTGGGTTGCATTC
TGACTAGGTATCTCTTTCAAATTATACGTAAATATATTTAAAAGAGATACGTATGTATATAAGAGGT
TAGTGTGAATTTAATTTACTTATGTTTAATCTAGGTTAATGTAAATTTAATTTACTTATGAACAATTTAGATTAATGTAAATTCAATTTACTTATGTTCA
ATTTAAGTTAATGTAAATTAAGTTAACATATGTATATAAGAGGTTAGT
GTGAATTCAGTTTACGTACGTT
CAATCTAGGTTAATGTA
dot-bracket secondary structure
.((((..((((
((((((((.(((((((.(((.(
(((((..((((((((((.(((((((......))).)))).)))))))))).((((((((((.(((..
(((.(((((((.(((((((......((((((((((((...((((((...))))))........)))))))))))).))))))).))))))))))..))).
..((((.(((((....))))).))))..))))))))))...)))))).
)))))))))).)).))))))).
.......)))..)))).
SIMILARITIES
miRBase
mtr-MIR2618a
:
6e-42
PMRD
no hits
microPC
no hits
UniProt
no hits
RFAM
no hits
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
additional data
download this record
evidence:
454
references
[
1
] Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M,
Plant Cell. 21:2780-2796(2009).
,
"Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules"