ABOUT THIS RECORDspecies: Phaseolus vulgaris
miRNA family: MIR399
source: miRBase, original name: pvu-MIR399a (MI0010706)
Taxonomy by NCBI:
Phaseolus vulgaris Phaseolus Phaseoleae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGCCAAAGGAGAGTTGCCCTG miRNA* GGGCTTCTCTTTGTTGGCAGG mismatches: 4 bulges: 0 |
pre-miRNA
TGCACAAGATATTATAGTCAATAAGCAAACCAGTTATAGGGCTTCTCTTTGTTGGCAGGAAATGACATGACCACTTCATGAAATATCTTGCCAAAGGAGA
GTTGCCCTGTTGCTGCTTTAGCTTAATATGTAATCTTCTATGCTATTCAGTGCATATGATCATTCACTCCATTGAAGAGAAGCACTGAAGTAGTATGCAA
GGGATCAAACAAATGACTTCATC
dot-bracket secondary structure
...............(((((.((((((((.((((.(((((((..(((((..(((((((((.((..(((((.....)))))..)).)))))))))..))))
)..))))))).)))).))).)))))...((...((((.(((((((((((((((...(((....)))(((.......)))..)))))).))))))))).))
))...))......))))).....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned, Northern
references
[1] Arenas-Huertero C, Perez B, Rabanal F, Blanco-Melo D, De la Rosa C, Estrada-Navarrete G, Sanchez F, Covarrubias AA, Reyes JL, Plant Mol Biol. 70:385-401(2009)., "Conserved and novel miRNAs in the legume Phaseolus vulgaris in response to stress"
TGCACAAGATATTATAGTCAATAAGCAAACCAGTTATAGGGCTTCTCTTTGTTGGCAGGAAATGACATGACCACTTCATGAAATATCTTGCCAAAGGAGA
GTTGCCCTGTTGCTGCTTTAGCTTAATATGTAATCTTCTATGCTATTCAGTGCATATGATCATTCACTCCATTGAAGAGAAGCACTGAAGTAGTATGCAA
GGGATCAAACAAATGACTTCATC
dot-bracket secondary structure
...............(((((.((((((((.((((.(((((((..(((((..(((((((((.((..(((((.....)))))..)).)))))))))..))))
)..))))))).)))).))).)))))...((...((((.(((((((((((((((...(((....)))(((.......)))..)))))).))))))))).))
))...))......))))).....
SIMILARITIES| miRBase mtr-MIR399p: 0.0000007 PMRD pvu-miR399a: 5e-125 microPC miR399: 2e-28 | UniProt no hits RFAM mir-399: 0.000000000000001 |
Identical with: pvu-miR399a from PMRD (MNEST054381) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned, Northern
references
[1] Arenas-Huertero C, Perez B, Rabanal F, Blanco-Melo D, De la Rosa C, Estrada-Navarrete G, Sanchez F, Covarrubias AA, Reyes JL, Plant Mol Biol. 70:385-401(2009)., "Conserved and novel miRNAs in the legume Phaseolus vulgaris in response to stress"
