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ABOUT THIS RECORD
ID:
MNEST041030
species:
Phaseolus vulgaris
miRNA family:
MIR2118
source:
miRBase, original name:
pvu-MIR2118
(
MI0010699
)
Taxonomy by NCBI:
Phaseolus vulgaris
Phaseolus
Phaseoleae
Papilionoideae
Fabaceae
Fabales
fabids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TTGCCGATTCCACCCATTCCTA
miRNA*
GGAGATGGGTGGGTTGGTAAAA
mismatches:
0
bulges:
2
View larger
pre-miRNA
AAGAGCTTGAGGAAGTGATG
GGAGATGGGTGGGTTGGTAAAA
CATAAGAGAATGAATATTTCTCACTCTGTT
TTGCCGATTCCACCCATTCCTA
TGATTT
CCTTTGGTTCCTTTCTTTCCACTCT
dot-bracket secondary structure
..(((((.((((((((.(((
((((.(((((((((((((((((
((...(((((.......)))))....))))
))))))).))))))))))))))
).))))
)))).)))))...............
SIMILARITIES
miRBase
mtr-MIR2118
:
0.000000000000007
PMRD
pvu-miR2118
:
4e-44
microPC
no hits
UniProt
no hits
RFAM
no hits
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
additional data
download this record
evidence:
cloned
references
[
1
] Arenas-Huertero C, Perez B, Rabanal F, Blanco-Melo D, De la Rosa C, Estrada-Navarrete G, Sanchez F, Covarrubias AA, Reyes JL,
Plant Mol Biol. 70:385-401(2009).
,
"Conserved and novel miRNAs in the legume Phaseolus vulgaris in response to stress"