ABOUT THIS RECORDspecies: Phaseolus vulgaris
miRNA family: MIR2119
source: miRBase, original name: pvu-MIR2119 (MI0010703)
Taxonomy by NCBI:
Phaseolus vulgaris Phaseolus Phaseoleae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCAAAGGGAGTTGTAGGGGAA miRNA* CCTCTACAACTCTCTTTTATT mismatches: 3 bulges: 0 |
pre-miRNA
AGCAATGGTGTTATTTTTATACTTTATTTTCTATGCTTTTCCTCTACAACTCTCTTTTATTTTGGATAAATGAAGTGGATTTCTACTCTTTGATTGGAGA
AAAAAAGTGGATTTCTATTTTTTTCAATCAAAGGGAGTTGTAGGGGAA
dot-bracket secondary structure
((((..(((((.......)))))..........))))..((((((((((((((((((....(((((.....((((((((..((((((.(((.........
.))).))))))..)))))))).)))))..)))))))))))))))))).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned, Northern
references
[1] Arenas-Huertero C, Perez B, Rabanal F, Blanco-Melo D, De la Rosa C, Estrada-Navarrete G, Sanchez F, Covarrubias AA, Reyes JL, Plant Mol Biol. 70:385-401(2009)., "Conserved and novel miRNAs in the legume Phaseolus vulgaris in response to stress"
AGCAATGGTGTTATTTTTATACTTTATTTTCTATGCTTTTCCTCTACAACTCTCTTTTATTTTGGATAAATGAAGTGGATTTCTACTCTTTGATTGGAGA
AAAAAAGTGGATTTCTATTTTTTTCAATCAAAGGGAGTTGTAGGGGAA
dot-bracket secondary structure
((((..(((((.......)))))..........))))..((((((((((((((((((....(((((.....((((((((..((((((.(((.........
.))).))))))..)))))))).)))))..)))))))))))))))))).
SIMILARITIES| miRBase gma-MIR2119: 0.000002 PMRD pvu-miR2119: 8e-18 microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned, Northern
references
[1] Arenas-Huertero C, Perez B, Rabanal F, Blanco-Melo D, De la Rosa C, Estrada-Navarrete G, Sanchez F, Covarrubias AA, Reyes JL, Plant Mol Biol. 70:385-401(2009)., "Conserved and novel miRNAs in the legume Phaseolus vulgaris in response to stress"
