ABOUT THIS RECORDspecies: Vigna unguiculata
miRNA family: MIR1507
source: miRBase, original name: vun-MIR1507a (MI0010582)
Taxonomy by NCBI:
Vigna unguiculata Vigna Phaseoleae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCTCATTCCATACATCGTCTG miRNA* GAGGTGTATGGAGTGAGAGA mismatches: 0 bulges: 1 |
pre-miRNA
GTAGTATTTGGCAGAGGTGTATGGAGTGAGAGAAGGGAAAAACGCCTTTGCCGATCTCATCGGTTCTTTTTTTCCTCTCTCATTCCATACATCGTCTGAC
GAACGTAGC
dot-bracket secondary structure
((.(..((((.((((((((((((((((((((((.((((((((.(.....((((((...)))))).).)))))))))))))))))))))))))).)))).)
)))..).))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Wang Y, Li P, Cao X, Wang X, Zhang A, Li X, Biochem Biophys Res Commun. 378:799-803(2009)., "Identification and expression analysis of miRNAs from nitrogen-fixing soybean nodules"
GTAGTATTTGGCAGAGGTGTATGGAGTGAGAGAAGGGAAAAACGCCTTTGCCGATCTCATCGGTTCTTTTTTTCCTCTCTCATTCCATACATCGTCTGAC
GAACGTAGC
dot-bracket secondary structure
((.(..((((.((((((((((((((((((((((.((((((((.(.....((((((...)))))).).)))))))))))))))))))))))))).)))).)
)))..).))
SIMILARITIES| miRBase vun-MIR1507b: 2e-42 PMRD vun-miR1507a: 9e-45 microPC miR1507: 7e-30 | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Wang Y, Li P, Cao X, Wang X, Zhang A, Li X, Biochem Biophys Res Commun. 378:799-803(2009)., "Identification and expression analysis of miRNAs from nitrogen-fixing soybean nodules"
