ABOUT THIS RECORDspecies: Vigna unguiculata
miRNA family: MIR1507
source: miRBase, original name: vun-MIR1507b (MI0010707)
Taxonomy by NCBI:
Vigna unguiculata Vigna Phaseoleae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCTCATTCCATACATCGTCTG miRNA* GAGGTGTATGGAGTGAGAGA mismatches: 0 bulges: 1 |
pre-miRNA
GTAGTATTTGGCAGAGGTGTATGGAGTGAGAGAAGGGAAAAACGCCTTTCCCGATCTCATCGGTTCTTTCTTTCCTCTCTCATTCCATACATCGTCTGAC
GAACGTAGC
dot-bracket secondary structure
((.(..((((.((((((((((((((((((((((.(((((...........(((((...))))).......))))))))))))))))))))))).)))).)
)))..).))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Wang Y, Li P, Cao X, Wang X, Zhang A, Li X, Biochem Biophys Res Commun. 378:799-803(2009)., "Identification and expression analysis of miRNAs from nitrogen-fixing soybean nodules"
GTAGTATTTGGCAGAGGTGTATGGAGTGAGAGAAGGGAAAAACGCCTTTCCCGATCTCATCGGTTCTTTCTTTCCTCTCTCATTCCATACATCGTCTGAC
GAACGTAGC
dot-bracket secondary structure
((.(..((((.((((((((((((((((((((((.(((((...........(((((...))))).......))))))))))))))))))))))).)))).)
)))..).))
SIMILARITIES| miRBase vun-MIR1507a: 1e-52 PMRD vun-miR1507b: 3e-57 microPC miR1507: 9e-45 | UniProt no hits RFAM no hits |
Identical with: miR1507 from microPC (MNEST045386) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Wang Y, Li P, Cao X, Wang X, Zhang A, Li X, Biochem Biophys Res Commun. 378:799-803(2009)., "Identification and expression analysis of miRNAs from nitrogen-fixing soybean nodules"
