ABOUT THIS RECORDspecies: Gossypium hirsutum
miRNA family: MIR164
source: miRBase, original name: ghr-MIR164 (MI0013538)
Taxonomy by NCBI:
Gossypium hirsutum Gossypium Malvoideae Malvaceae Malvales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGGAGAAGCAGGGCACGTGCA miRNA* CACGTGCTCCCCTTCTCCACC mismatches: 2 bulges: 0 |
pre-miRNA
GGGGTGAGTATCTCTTGTTGGAGAAGCAGGGCACGTGCAAGTTCCTATGTTTAAGTGAACTTTGCACGTGCTCCCCTTCTCCACCGTGAGTTTCTCATTC
T
dot-bracket secondary structure
((((((((...(((.((.((((((((..((((((((((((((((((.......)).)))).))))))))))))..)))))))).)).)))...)))))))
)
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Pang M, Woodward AW, Agarwal V, Guan X, Ha M, Ramachandran V, Chen X, Triplett BA, Stelly DM, Chen ZJ, Genome Biol. 10:R122(2009)., "Genome-wide analysis reveals rapid and dynamic changes in miRNA and siRNA sequence and expression during ovule and fiber development in allotetraploid cotton (Gossypium hirsutum L.)"
GGGGTGAGTATCTCTTGTTGGAGAAGCAGGGCACGTGCAAGTTCCTATGTTTAAGTGAACTTTGCACGTGCTCCCCTTCTCCACCGTGAGTTTCTCATTC
T
dot-bracket secondary structure
((((((((...(((.((.((((((((..((((((((((((((((((.......)).)))).))))))))))))..)))))))).)).)))...)))))))
)
SIMILARITIES| miRBase tcc-MIR164b: 0.00000000000002 PMRD gma-miR164: 0.000000001 microPC miR164: 0.00002 | UniProt no hits RFAM MIR164: 0.00000002 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Pang M, Woodward AW, Agarwal V, Guan X, Ha M, Ramachandran V, Chen X, Triplett BA, Stelly DM, Chen ZJ, Genome Biol. 10:R122(2009)., "Genome-wide analysis reveals rapid and dynamic changes in miRNA and siRNA sequence and expression during ovule and fiber development in allotetraploid cotton (Gossypium hirsutum L.)"
