ABOUT THIS RECORDspecies: Gossypium hirsutum
miRNA family: MIR172
source: miRBase, original name: ghr-MIR172 (MI0013540)
Taxonomy by NCBI:
Gossypium hirsutum Gossypium Malvoideae Malvaceae Malvales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AGAATCCTGATGATGCTGCAG miRNA* GGAGCATCATCAAGATTCACA mismatches: 3 bulges: 0 |
pre-miRNA
AGTCACTGTTTGCTGTTGGAGCATCATCAAGATTCACAATTTTAGGGTTCTTTTTTGATTGATTTGATCAATCAGCCTTTTTATGATTGAGAATCCTGAT
GATGCTGCAGTGGCAATAAGTGGCT
dot-bracket secondary structure
(((((((..((((..(((.((((((((((.(((((.(((((..(((((.......((((((((...))))))))))))).....))))).))))).))))
)))))).)))..))))..)))))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Pang M, Woodward AW, Agarwal V, Guan X, Ha M, Ramachandran V, Chen X, Triplett BA, Stelly DM, Chen ZJ, Genome Biol. 10:R122(2009)., "Genome-wide analysis reveals rapid and dynamic changes in miRNA and siRNA sequence and expression during ovule and fiber development in allotetraploid cotton (Gossypium hirsutum L.)"
AGTCACTGTTTGCTGTTGGAGCATCATCAAGATTCACAATTTTAGGGTTCTTTTTTGATTGATTTGATCAATCAGCCTTTTTATGATTGAGAATCCTGAT
GATGCTGCAGTGGCAATAAGTGGCT
dot-bracket secondary structure
(((((((..((((..(((.((((((((((.(((((.(((((..(((((.......((((((((...))))))))))))).....))))).))))).))))
)))))).)))..))))..)))))))
SIMILARITIES| miRBase tcc-MIR172a: 0.0000000000004 PMRD ath-miRf11051-akr: 0.0000000001 microPC miR172: 0.0001 | UniProt no hits RFAM mir-172: 0.000000007 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Pang M, Woodward AW, Agarwal V, Guan X, Ha M, Ramachandran V, Chen X, Triplett BA, Stelly DM, Chen ZJ, Genome Biol. 10:R122(2009)., "Genome-wide analysis reveals rapid and dynamic changes in miRNA and siRNA sequence and expression during ovule and fiber development in allotetraploid cotton (Gossypium hirsutum L.)"
