ABOUT THIS RECORDspecies: Gossypium hirsutum
miRNA family: MIR396
source: miRBase, original name: ghr-MIR396b (MI0005651)
Taxonomy by NCBI:
Gossypium hirsutum Gossypium Malvoideae Malvaceae Malvales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTCCACAGCTTTCTTGAACTG miRNA* GTTCAATAAAGCTGTGGGAAG mismatches: 1 bulges: 0 |
pre-miRNA
CTTCGTATTCTTCCACAGCTTTCTTGAACTGCAATTTCATGTAATCAGATCATTCATTCATTCATTGTCGTTGATGGTGTTGCATACATACGAGTACGTT
GTTGCGGTTCAATAAAGCTGTGGGAAGATACAAAC
dot-bracket secondary structure
....((((..((((((((((((.((((((((((((...(((((.((.((....)).......(((..((...))..)))............)).))))).
)))))))))))).))))))))))))..))))....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Khan Barozai MY, Irfan M, Yousaf R, Ali I, Qaisar U, Maqbool A, Zahoor M, Rashid B, Hussnain T, Riazuddin S, Plant Physiol Biochem. 46:739-751(2008)., "Identification of micro-RNAs in cotton"
CTTCGTATTCTTCCACAGCTTTCTTGAACTGCAATTTCATGTAATCAGATCATTCATTCATTCATTGTCGTTGATGGTGTTGCATACATACGAGTACGTT
GTTGCGGTTCAATAAAGCTGTGGGAAGATACAAAC
dot-bracket secondary structure
....((((..((((((((((((.((((((((((((...(((((.((.((....)).......(((..((...))..)))............)).))))).
)))))))))))).))))))))))))..))))....
SIMILARITIES| miRBase ghr-MIR396a: 1e-65 PMRD ghr-miR396c: 8e-61 microPC miR396: 8e-61 | UniProt no hits RFAM MIR396: 0.0000000000005 |
Identical with: miR396 from microPC (MNEST045646) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Khan Barozai MY, Irfan M, Yousaf R, Ali I, Qaisar U, Maqbool A, Zahoor M, Rashid B, Hussnain T, Riazuddin S, Plant Physiol Biochem. 46:739-751(2008)., "Identification of micro-RNAs in cotton"
