ABOUT THIS RECORDspecies: Gossypium hirsutum
miRNA family: MIR399
source: miRBase, original name: ghr-MIR399b (MI0005653)
Taxonomy by NCBI:
Gossypium hirsutum Gossypium Malvoideae Malvaceae Malvales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CGCCAATGGAGATTTGTCCGG miRNA* GGGCAAAATCTTCAGTGGCAGG mismatches: 3 bulges: 1 |
pre-miRNA
TGAGATATTACAGGGCAAAATCTTCAGTGGCAGGCAGCCATTGTATATGGCTCCGTTCATCAGGCATCAGCTGTATGGAAAATTGCAGTGTGTTCTCCGC
CAATGGAGATTTGTCCGGTAATTCCGGT
dot-bracket secondary structure
...(..(((((.(((((((.((((((.((((.((.((((((.....))))))))........(((((..((((((........)))))))))))....))
)).))))))))))))).)))))..)...
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Khan Barozai MY, Irfan M, Yousaf R, Ali I, Qaisar U, Maqbool A, Zahoor M, Rashid B, Hussnain T, Riazuddin S, Plant Physiol Biochem. 46:739-751(2008)., "Identification of micro-RNAs in cotton"
TGAGATATTACAGGGCAAAATCTTCAGTGGCAGGCAGCCATTGTATATGGCTCCGTTCATCAGGCATCAGCTGTATGGAAAATTGCAGTGTGTTCTCCGC
CAATGGAGATTTGTCCGGTAATTCCGGT
dot-bracket secondary structure
...(..(((((.(((((((.((((((.((((.((.((((((.....))))))))........(((((..((((((........)))))))))))....))
)).))))))))))))).)))))..)...
SIMILARITIES| miRBase ghr-MIR399a: 2e-52 PMRD no hits microPC no hits | UniProt no hits RFAM mir-399: 1e-62 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Khan Barozai MY, Irfan M, Yousaf R, Ali I, Qaisar U, Maqbool A, Zahoor M, Rashid B, Hussnain T, Riazuddin S, Plant Physiol Biochem. 46:739-751(2008)., "Identification of micro-RNAs in cotton"
