ABOUT THIS RECORDspecies: Gossypium hirsutum
miRNA family: MIR399
source: miRBase, original name: ghr-MIR399c (MI0013556)
Taxonomy by NCBI:
Gossypium hirsutum Gossypium Malvoideae Malvaceae Malvales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGCCAAAGGAGAGTTGGCCTT miRNA* GGCTTCTCTGCATTGGCAGG mismatches: 3 bulges: 1 |
pre-miRNA
AGGGCTTCTCTGCATTGGCAGGTAGATGATAACTCCACATCATGTAGTTAACCTGCCAAAGGAGAGTTGGCCTT
dot-bracket secondary structure
((((((.((((.(.((((((((((.(((((........))))).).....))))))))).).))))..))))))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Pang M, Woodward AW, Agarwal V, Guan X, Ha M, Ramachandran V, Chen X, Triplett BA, Stelly DM, Chen ZJ, Genome Biol. 10:R122(2009)., "Genome-wide analysis reveals rapid and dynamic changes in miRNA and siRNA sequence and expression during ovule and fiber development in allotetraploid cotton (Gossypium hirsutum L.)"
AGGGCTTCTCTGCATTGGCAGGTAGATGATAACTCCACATCATGTAGTTAACCTGCCAAAGGAGAGTTGGCCTT
dot-bracket secondary structure
((((((.((((.(.((((((((((.(((((........))))).).....))))))))).).))))..))))))
SIMILARITIES| miRBase csi-MIR399b: 0.0008 PMRD ghr-miR399a: 1e-36 microPC no hits | UniProt no hits RFAM no hits |
Identical with: ghr-miR399a from PMRD (MNEST048512) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Pang M, Woodward AW, Agarwal V, Guan X, Ha M, Ramachandran V, Chen X, Triplett BA, Stelly DM, Chen ZJ, Genome Biol. 10:R122(2009)., "Genome-wide analysis reveals rapid and dynamic changes in miRNA and siRNA sequence and expression during ovule and fiber development in allotetraploid cotton (Gossypium hirsutum L.)"
