ABOUT THIS RECORDspecies: Gossypium hirsutum
miRNA family: MIR171_2
source: miRBase, original name: ghr-MIR479 (MI0013545)
Taxonomy by NCBI:
Gossypium hirsutum Gossypium Malvoideae Malvaceae Malvales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CGTGATATTGGTTCGGCTCATC miRNA* CGAGCCGAATCAATATCACTCA mismatches: 3 bulges: 0 |
pre-miRNA
GGAGGAGTAGACACGACGTGATATTGGTTCGGCTCATCTTATTGTGATTAAAAATTTCAAGGCGAGCCGAATCAATATCACTCATGTATGCTTTTTT
dot-bracket secondary structure
.((((((((.(((.((.((((((((((((((((((..(((...((........))...)))..)))))))))))))))))))).))).)))))))).
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Pang M, Woodward AW, Agarwal V, Guan X, Ha M, Ramachandran V, Chen X, Triplett BA, Stelly DM, Chen ZJ, Genome Biol. 10:R122(2009)., "Genome-wide analysis reveals rapid and dynamic changes in miRNA and siRNA sequence and expression during ovule and fiber development in allotetraploid cotton (Gossypium hirsutum L.)"
GGAGGAGTAGACACGACGTGATATTGGTTCGGCTCATCTTATTGTGATTAAAAATTTCAAGGCGAGCCGAATCAATATCACTCATGTATGCTTTTTT
dot-bracket secondary structure
.((((((((.(((.((.((((((((((((((((((..(((...((........))...)))..)))))))))))))))))))).))).)))))))).
SIMILARITIES| miRBase ptc-MIR171l: 0.00000002 PMRD ptc-miR171l: 0.00000002 microPC miR171: 0.00007 | UniProt no hits RFAM MIR171_2: 0.000000006 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Pang M, Woodward AW, Agarwal V, Guan X, Ha M, Ramachandran V, Chen X, Triplett BA, Stelly DM, Chen ZJ, Genome Biol. 10:R122(2009)., "Genome-wide analysis reveals rapid and dynamic changes in miRNA and siRNA sequence and expression during ovule and fiber development in allotetraploid cotton (Gossypium hirsutum L.)"
