ABOUT THIS RECORDspecies: Gossypium hirsutum
miRNA family: MIR482
source: miRBase, original name: ghr-MIR482a (MI0013546)
Taxonomy by NCBI:
Gossypium hirsutum Gossypium Malvoideae Malvaceae Malvales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCTTTCCTACTCCTCCCATACC miRNA* AAGTGGGATGGGTGGAAAGATT mismatches: 2 bulges: 2 |
pre-miRNA
ATTGTTAAAGAGGGAAAGGGAGAAAGAGTTGCCGGGAGTTTATGGAAGTGGGATGGGTGGAAAGATTTGTATTTTCTCTCTTGAGTTTCTAAGAATGTAA
AGCAAATCTTTCCTACTCCTCCCATACCACTTATTTCCAGTTCTTCCTCTCCACTTCTTACTTTTCTCGAT
dot-bracket secondary structure
((((..((((..((((..(((((..(((..((.((((((...(((..((((((.((((((((((((((((.(((.(..(((((......)))))..).))
))))))))))))).)))).)))))).)))...)))))).)).)))..)))))..))))..))))...))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Pang M, Woodward AW, Agarwal V, Guan X, Ha M, Ramachandran V, Chen X, Triplett BA, Stelly DM, Chen ZJ, Genome Biol. 10:R122(2009)., "Genome-wide analysis reveals rapid and dynamic changes in miRNA and siRNA sequence and expression during ovule and fiber development in allotetraploid cotton (Gossypium hirsutum L.)"
ATTGTTAAAGAGGGAAAGGGAGAAAGAGTTGCCGGGAGTTTATGGAAGTGGGATGGGTGGAAAGATTTGTATTTTCTCTCTTGAGTTTCTAAGAATGTAA
AGCAAATCTTTCCTACTCCTCCCATACCACTTATTTCCAGTTCTTCCTCTCCACTTCTTACTTTTCTCGAT
dot-bracket secondary structure
((((..((((..((((..(((((..(((..((.((((((...(((..((((((.((((((((((((((((.(((.(..(((((......)))))..).))
))))))))))))).)))).)))))).)))...)))))).)).)))..)))))..))))..))))...))))
SIMILARITIES| miRBase gra-MIR482: 0.0000001 PMRD ghr-miR482a: 9e-43 microPC miR472: 9e-43 | UniProt no hits RFAM no hits |
Identical with: miR472 from microPC (MNEST046297) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Pang M, Woodward AW, Agarwal V, Guan X, Ha M, Ramachandran V, Chen X, Triplett BA, Stelly DM, Chen ZJ, Genome Biol. 10:R122(2009)., "Genome-wide analysis reveals rapid and dynamic changes in miRNA and siRNA sequence and expression during ovule and fiber development in allotetraploid cotton (Gossypium hirsutum L.)"
