ABOUT THIS RECORDspecies: Gossypium hirsutum
miRNA family: MIR827
source: miRBase, original name: ghr-MIR827b (MI0013549)
Taxonomy by NCBI:
Gossypium hirsutum Gossypium Malvoideae Malvaceae Malvales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTAGATGACCATCAACAAACA miRNA* TTTGTTTATGGTCATCTAAGC mismatches: 1 bulges: 0 |
pre-miRNA
CTTTTTCTTTTCATGAAAATGCATTATTGAATGTGTTTGTTTATGGTCATCTAAGCCATTTTTCATCTCGCCAATTCTTTGTTCAAGCAGTTTTTGGATA
ATCGAACCGATAGAATACACCCGCAGAAATGATGTTTAGATGACCATCAACAAACAACTTCATCTTATTGCATCAAGTGTTCAAGATTTAAG
dot-bracket secondary structure
(((..((((..(((....(((((.((.((((..((((((((.((((((((((((((((((((((......((((....((((....))))...))))...
((((...))))...........).)))))))..)))))))))))))).))))))))..))))...)).)))))...)))...))))...)))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Pang M, Woodward AW, Agarwal V, Guan X, Ha M, Ramachandran V, Chen X, Triplett BA, Stelly DM, Chen ZJ, Genome Biol. 10:R122(2009)., "Genome-wide analysis reveals rapid and dynamic changes in miRNA and siRNA sequence and expression during ovule and fiber development in allotetraploid cotton (Gossypium hirsutum L.)"
CTTTTTCTTTTCATGAAAATGCATTATTGAATGTGTTTGTTTATGGTCATCTAAGCCATTTTTCATCTCGCCAATTCTTTGTTCAAGCAGTTTTTGGATA
ATCGAACCGATAGAATACACCCGCAGAAATGATGTTTAGATGACCATCAACAAACAACTTCATCTTATTGCATCAAGTGTTCAAGATTTAAG
dot-bracket secondary structure
(((..((((..(((....(((((.((.((((..((((((((.((((((((((((((((((((((......((((....((((....))))...))))...
((((...))))...........).)))))))..)))))))))))))).))))))))..))))...)).)))))...)))...))))...)))
SIMILARITIES| miRBase ghr-MIR827a: 1e-79 PMRD ath-miR827: 0.00004 microPC miR827: 3e-64 | UniProt no hits RFAM no hits |
Identical with: miR827 from microPC (MNEST045054) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Pang M, Woodward AW, Agarwal V, Guan X, Ha M, Ramachandran V, Chen X, Triplett BA, Stelly DM, Chen ZJ, Genome Biol. 10:R122(2009)., "Genome-wide analysis reveals rapid and dynamic changes in miRNA and siRNA sequence and expression during ovule and fiber development in allotetraploid cotton (Gossypium hirsutum L.)"
