ABOUT THIS RECORDspecies: Gossypium hirsutum
miRNA family: MIR2949
source: miRBase, original name: ghr-MIR2949a (MI0013552)
Taxonomy by NCBI:
Gossypium hirsutum Gossypium Malvoideae Malvaceae Malvales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ACTTTTGAACTGGATTTGCCGA miRNA* TGCAAATCCAGTCAAAAGTTA mismatches: 2 bulges: 1 |
pre-miRNA
GTCTTAGTTTGCGTCTTGACTTTTGAACTGGATTTGCCGACTTGAACTGCGTTGTTGATGGTTTCCAAAACCCGAGCCTGCAAATCCAGTCAAAAGTTAA
AACCGGGCTGAGAT
dot-bracket secondary structure
(((((((((((.((.(((((((((((.((((((((((.(.(((((((......)))...((((.....)))))))).).)))))))))))))))))))))
.)))))))))))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Kwak PB, Wang QQ, Chen XS, Qiu CX, Yang ZM, BMC Genomics. 10:457(2009)., "Enrichment of a set of microRNAs during the cotton fiber development"
[2] Pang M, Woodward AW, Agarwal V, Guan X, Ha M, Ramachandran V, Chen X, Triplett BA, Stelly DM, Chen ZJ, Genome Biol. 10:R122(2009)., "Genome-wide analysis reveals rapid and dynamic changes in miRNA and siRNA sequence and expression during ovule and fiber development in allotetraploid cotton (Gossypium hirsutum L.)"
GTCTTAGTTTGCGTCTTGACTTTTGAACTGGATTTGCCGACTTGAACTGCGTTGTTGATGGTTTCCAAAACCCGAGCCTGCAAATCCAGTCAAAAGTTAA
AACCGGGCTGAGAT
dot-bracket secondary structure
(((((((((((.((.(((((((((((.((((((((((.(.(((((((......)))...((((.....)))))))).).)))))))))))))))))))))
.)))))))))))))
SIMILARITIES| miRBase ghr-MIR2949c: 2e-48 PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Kwak PB, Wang QQ, Chen XS, Qiu CX, Yang ZM, BMC Genomics. 10:457(2009)., "Enrichment of a set of microRNAs during the cotton fiber development"
[2] Pang M, Woodward AW, Agarwal V, Guan X, Ha M, Ramachandran V, Chen X, Triplett BA, Stelly DM, Chen ZJ, Genome Biol. 10:R122(2009)., "Genome-wide analysis reveals rapid and dynamic changes in miRNA and siRNA sequence and expression during ovule and fiber development in allotetraploid cotton (Gossypium hirsutum L.)"
