ABOUT THIS RECORDspecies: Gossypium hirsutum
miRNA family: MIR2949
source: miRBase, original name: ghr-MIR2949c (MI0013554)
Taxonomy by NCBI:
Gossypium hirsutum Gossypium Malvoideae Malvaceae Malvales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCTTTTGAACTGGATTTGCCGA miRNA* TGCAAATCCAGTCAAAAGTTA mismatches: 3 bulges: 1 |
pre-miRNA
CATGATGCTGCTCAGTATTTTAATACTGGTCTTACTGTCTTAGTTTGCGTCTTGTCTTTTGAACTGGATTTGCCGACTTGAACTGCGTTGTTGAAGGTTT
ACAAAACCCGAGCCTGCAAATCCAGTCAAAAGTTAAACCGGGCTGAGATTTACGAATCTGATATATATTGGGAGGTATTATG
dot-bracket secondary structure
(((((((((.((((((((....(((..((.......(((((((((((.((.(((.(((((((.((((((((((.(.(((((((......)))...((((.
....)))))))).).))))))))))))))))).))))))))))))))))........))..))))))))))).)))))))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Pang M, Woodward AW, Agarwal V, Guan X, Ha M, Ramachandran V, Chen X, Triplett BA, Stelly DM, Chen ZJ, Genome Biol. 10:R122(2009)., "Genome-wide analysis reveals rapid and dynamic changes in miRNA and siRNA sequence and expression during ovule and fiber development in allotetraploid cotton (Gossypium hirsutum L.)"
CATGATGCTGCTCAGTATTTTAATACTGGTCTTACTGTCTTAGTTTGCGTCTTGTCTTTTGAACTGGATTTGCCGACTTGAACTGCGTTGTTGAAGGTTT
ACAAAACCCGAGCCTGCAAATCCAGTCAAAAGTTAAACCGGGCTGAGATTTACGAATCTGATATATATTGGGAGGTATTATG
dot-bracket secondary structure
(((((((((.((((((((....(((..((.......(((((((((((.((.(((.(((((((.((((((((((.(.(((((((......)))...((((.
....)))))))).).))))))))))))))))).))))))))))))))))........))..))))))))))).)))))))))
SIMILARITIES| miRBase ghr-MIR2949b: 1e-100 PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
Identical with: ghr-MIR2949b from miRBase (MNEST041072) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Pang M, Woodward AW, Agarwal V, Guan X, Ha M, Ramachandran V, Chen X, Triplett BA, Stelly DM, Chen ZJ, Genome Biol. 10:R122(2009)., "Genome-wide analysis reveals rapid and dynamic changes in miRNA and siRNA sequence and expression during ovule and fiber development in allotetraploid cotton (Gossypium hirsutum L.)"
