ABOUT THIS RECORDspecies: Gossypium hirsutum
miRNA family: MIR3476
source: miRBase, original name: ghr-MIR3476 (MI0014715)
Taxonomy by NCBI:
Gossypium hirsutum Gossypium Malvoideae Malvaceae Malvales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGAACTGGGTTTGTTGGCTGC miRNA* AGCCAACAACATCAGTTCTAA mismatches: 4 bulges: 0 |
pre-miRNA
TATCTTGATTTGAACTGGGTTTGTTGGCTGCTGATCTGCTTTTTTGAAGCAGATATCAAATCTAGTTAATAAAACACTTTTCAGGAGCCAACAACATCAG
TTCTAACCAGGACT
dot-bracket secondary structure
..(((((.((.(((((((..(((((((((.((((((((((((...))))))))...........(((.....))).....)))).)))))))))..))))
))).)).)))))..
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Kwak PB, Wang QQ, Chen XS, Qiu CX, Yang ZM, BMC Genomics. 10:457(2009)., "Enrichment of a set of microRNAs during the cotton fiber development"
TATCTTGATTTGAACTGGGTTTGTTGGCTGCTGATCTGCTTTTTTGAAGCAGATATCAAATCTAGTTAATAAAACACTTTTCAGGAGCCAACAACATCAG
TTCTAACCAGGACT
dot-bracket secondary structure
..(((((.((.(((((((..(((((((((.((((((((((((...))))))))...........(((.....))).....)))).)))))))))..))))
))).)).)))))..
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Kwak PB, Wang QQ, Chen XS, Qiu CX, Yang ZM, BMC Genomics. 10:457(2009)., "Enrichment of a set of microRNAs during the cotton fiber development"
