ABOUT THIS RECORDspecies: Gossypium raimondii
miRNA family: MIR157
source: miRBase, original name: gra-MIR157a (MI0005642)
Taxonomy by NCBI:
Gossypium raimondii Gossypium Malvoideae Malvaceae Malvales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTGACAGAAGATAGAGAGCAC miRNA* GCTCTTTATGCTTCTGTCATCA mismatches: 1 bulges: 1 |
pre-miRNA
GTTGTTGACAGAAGATAGAGAGCACAGATGATGGTGTGCAATTAGGAGTCTTGAAGCAATGCATCCCACTCCTTTGTGCTCTTTATGCTTCTGTCATCAC
C
dot-bracket secondary structure
..((.(((((((((((((((((((((((.(((((..((((.(((((...))))).....))))..))).)).)))))))))))))).))))))))).)).
.
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Khan Barozai MY, Irfan M, Yousaf R, Ali I, Qaisar U, Maqbool A, Zahoor M, Rashid B, Hussnain T, Riazuddin S, Plant Physiol Biochem. 46:739-751(2008)., "Identification of micro-RNAs in cotton"
GTTGTTGACAGAAGATAGAGAGCACAGATGATGGTGTGCAATTAGGAGTCTTGAAGCAATGCATCCCACTCCTTTGTGCTCTTTATGCTTCTGTCATCAC
C
dot-bracket secondary structure
..((.(((((((((((((((((((((((.(((((..((((.(((((...))))).....))))..))).)).)))))))))))))).))))))))).)).
.
SIMILARITIES| miRBase ptc-MIR156j: 9e-17 PMRD gra-miR157a: 1e-52 microPC miR157: 3e-47 | UniProt no hits RFAM no hits |
Identical with: miR157 from microPC (MNEST044919) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Khan Barozai MY, Irfan M, Yousaf R, Ali I, Qaisar U, Maqbool A, Zahoor M, Rashid B, Hussnain T, Riazuddin S, Plant Physiol Biochem. 46:739-751(2008)., "Identification of micro-RNAs in cotton"
