ABOUT THIS RECORDspecies: Gossypium raimondii
miRNA family: MIR398
source: miRBase, original name: gra-MIR398 (MI0013535)
Taxonomy by NCBI:
Gossypium raimondii Gossypium Malvoideae Malvaceae Malvales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGTGTTCTCAGGTCACCCCTT miRNA* GGGGTGCCACCTAAGAACACAGG mismatches: 1 bulges: 2 |
pre-miRNA
GCCAAGATGGTTTACCCCAGAGGGGTGCCACCTAAGAACACAGGTCATCCCTTAACCAAATAGCTTGTGTTCTCAGGTCACCCCTTTGGGGTACATATAT
CTTCGCCATTCCCTTTTGTTTGC
dot-bracket secondary structure
((.((((((...(((((((((((((((..((((.((((((((((..((...........))..)))))))))).)))))))))))))))))))....)))
))).)).................
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Pang M, Woodward AW, Agarwal V, Guan X, Ha M, Ramachandran V, Chen X, Triplett BA, Stelly DM, Chen ZJ, Genome Biol. 10:R122(2009)., "Genome-wide analysis reveals rapid and dynamic changes in miRNA and siRNA sequence and expression during ovule and fiber development in allotetraploid cotton (Gossypium hirsutum L.)"
GCCAAGATGGTTTACCCCAGAGGGGTGCCACCTAAGAACACAGGTCATCCCTTAACCAAATAGCTTGTGTTCTCAGGTCACCCCTTTGGGGTACATATAT
CTTCGCCATTCCCTTTTGTTTGC
dot-bracket secondary structure
((.((((((...(((((((((((((((..((((.((((((((((..((...........))..)))))))))).)))))))))))))))))))....)))
))).)).................
SIMILARITIES| miRBase ghr-MIR398: 2e-55 PMRD ghr-miR398: 3e-32 microPC miR398: 3e-32 | UniProt no hits RFAM MIR398: 0.0000004 |
Identical with: miR398 from microPC (MNEST046499) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Pang M, Woodward AW, Agarwal V, Guan X, Ha M, Ramachandran V, Chen X, Triplett BA, Stelly DM, Chen ZJ, Genome Biol. 10:R122(2009)., "Genome-wide analysis reveals rapid and dynamic changes in miRNA and siRNA sequence and expression during ovule and fiber development in allotetraploid cotton (Gossypium hirsutum L.)"
