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ABOUT THIS RECORD
ID:
MNEST041081
species:
Theobroma cacao
miRNA family:
MIR156
source:
miRBase, original name:
tcc-MIR156b
(
MI0017454
)
Taxonomy by NCBI:
Theobroma cacao
Theobroma
Byttnerioideae
Malvaceae
Malvales
malvids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TGACAGAAGAGAGTGAGCAC
miRNA*
GCTCACTCTCTATCTGTCATC
mismatches:
0
bulges:
1
View larger
pre-miRNA
GGGTTTTAGGGTAAGGGAGG
TGACAGAAGAGAGTGAGCAC
ACAGGGTGCTTTCTTGCATGCTTGGCTTTCATGCTTGAAGCTCTGCGT
GCTCACTCTCTA
TCTGTCATC
CACCTCTCTCTCTCTCTCTC
dot-bracket secondary structure
(((....((((..(((..((
((((((((((((((((((((
.((((((...(((..(((((.........)))))..))))))))).))
))))))))))).
)))))))))
..)))..))))....)))..
SIMILARITIES
miRBase
ghr-MIR156a
:
2e-39
PMRD
ghr-miR156a
:
2e-39
microPC
miR156
:
0.0000000000004
UniProt
no hits
RFAM
mir-156: 5e-19
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
additional data
download this record
references
[
1
] Argout X, Salse J, Aury JM, Guiltinan MJ, Droc G, Gouzy J, Allegre M, Chaparro C, Legavre T, Maximova SN, Abrouk M, Murat F, Fouet O, Poulain J, Ruiz M, Roguet Y, Rodier-Goud M, Barbosa-Neto JF, Sabot F, Kudrna D, Ammiraju JS, Schuster SC, Carlson JE, Sal,
Nat Genet. 43:101-108(2011).
,
"The genome of Theobroma cacao"