ABOUT THIS RECORDspecies: Theobroma cacao
miRNA family: MIR156
source: miRBase, original name: tcc-MIR156c (MI0017455)
Taxonomy by NCBI:
Theobroma cacao Theobroma Byttnerioideae Malvaceae Malvales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGACAGAAGAGAGTGAGCAC miRNA* GCTCACTTCTCTTCTGTCAGC mismatches: 0 bulges: 1 |
pre-miRNA
GAAGAGGGACACAGAGAGACTGACAGAAGAGAGTGAGCACACGCAGGCAATTGTATGAAAAGCCATGCCTTTGCGGGTGCGTGCTCACTTCTCTTCTGTC
AGCTTCGGCTTTTGCATTGTG
dot-bracket secondary structure
.........(((((.((..(((((((((((((((((((((.(((..((((..(((((......)))))..))))..))).)))))))).)))))))))))
))..)).((....)).)))))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Argout X, Salse J, Aury JM, Guiltinan MJ, Droc G, Gouzy J, Allegre M, Chaparro C, Legavre T, Maximova SN, Abrouk M, Murat F, Fouet O, Poulain J, Ruiz M, Roguet Y, Rodier-Goud M, Barbosa-Neto JF, Sabot F, Kudrna D, Ammiraju JS, Schuster SC, Carlson JE, Sal, Nat Genet. 43:101-108(2011)., "The genome of Theobroma cacao"
GAAGAGGGACACAGAGAGACTGACAGAAGAGAGTGAGCACACGCAGGCAATTGTATGAAAAGCCATGCCTTTGCGGGTGCGTGCTCACTTCTCTTCTGTC
AGCTTCGGCTTTTGCATTGTG
dot-bracket secondary structure
.........(((((.((..(((((((((((((((((((((.(((..((((..(((((......)))))..))))..))).)))))))).)))))))))))
))..)).((....)).)))))
SIMILARITIES| miRBase rco-MIR156d: 3e-23 PMRD ghr-miR156d: 3e-20 microPC miR156: 0.00000000003 | UniProt no hits RFAM mir-156: 5e-25 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Argout X, Salse J, Aury JM, Guiltinan MJ, Droc G, Gouzy J, Allegre M, Chaparro C, Legavre T, Maximova SN, Abrouk M, Murat F, Fouet O, Poulain J, Ruiz M, Roguet Y, Rodier-Goud M, Barbosa-Neto JF, Sabot F, Kudrna D, Ammiraju JS, Schuster SC, Carlson JE, Sal, Nat Genet. 43:101-108(2011)., "The genome of Theobroma cacao"
