ABOUT THIS RECORDspecies: Theobroma cacao
miRNA family: MIR157
source: miRBase, original name: tcc-MIR156f (MI0017458)
Taxonomy by NCBI:
Theobroma cacao Theobroma Byttnerioideae Malvaceae Malvales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTGACAGAAGATAGAGAGCAC miRNA* GCTCTCTTTTCTTCTGTCAATG mismatches: 1 bulges: 1 |
pre-miRNA
TACGGATGAGGACGCTTTTGTTGACAGAAGATAGAGAGCACAACTGAACATACCCAGAAAAGGCCTGTGTATGAGCAGCCTTGTGCTCTCTTTTCTTCTG
TCAATGGAATTTTCTGTCAGAGTT
dot-bracket secondary structure
....(((.((((...(((..(((((((((((.((((((((((((((..(((((.(((.......))).)))))..)))..)))))))))))..)))))))
))))..)))..)))))))......
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Argout X, Salse J, Aury JM, Guiltinan MJ, Droc G, Gouzy J, Allegre M, Chaparro C, Legavre T, Maximova SN, Abrouk M, Murat F, Fouet O, Poulain J, Ruiz M, Roguet Y, Rodier-Goud M, Barbosa-Neto JF, Sabot F, Kudrna D, Ammiraju JS, Schuster SC, Carlson JE, Sal, Nat Genet. 43:101-108(2011)., "The genome of Theobroma cacao"
TACGGATGAGGACGCTTTTGTTGACAGAAGATAGAGAGCACAACTGAACATACCCAGAAAAGGCCTGTGTATGAGCAGCCTTGTGCTCTCTTTTCTTCTG
TCAATGGAATTTTCTGTCAGAGTT
dot-bracket secondary structure
....(((.((((...(((..(((((((((((.((((((((((((((..(((((.(((.......))).)))))..)))..)))))))))))..)))))))
))))..)))..)))))))......
SIMILARITIES| miRBase vvi-MIR156f: 1e-19 PMRD vvi-miR156f: 1e-19 microPC miR157: 0.00002 | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Argout X, Salse J, Aury JM, Guiltinan MJ, Droc G, Gouzy J, Allegre M, Chaparro C, Legavre T, Maximova SN, Abrouk M, Murat F, Fouet O, Poulain J, Ruiz M, Roguet Y, Rodier-Goud M, Barbosa-Neto JF, Sabot F, Kudrna D, Ammiraju JS, Schuster SC, Carlson JE, Sal, Nat Genet. 43:101-108(2011)., "The genome of Theobroma cacao"
