ABOUT THIS RECORDspecies: Theobroma cacao
miRNA family: MIR160
source: miRBase, original name: tcc-MIR160a (MI0017460)
Taxonomy by NCBI:
Theobroma cacao Theobroma Byttnerioideae Malvaceae Malvales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGCCTGGCTCCCTGAATGCCA miRNA* GCATGAGGGGAGTCATGCAGG mismatches: 3 bulges: 0 |
pre-miRNA
ACCTGGGAATGGGATTGTTCTGCCTGGCTCCCTGAATGCCATCTAAGAAGCTTGTCAAAGAGTGTTGGCTGCCTTCTTACATGGCATGAGGGGAGTCATG
CAGGCTTAACAATCCCAAGTTA
dot-bracket secondary structure
.........((((((((((((((.(((((((((..(((((((.(((((((...(((((......)))))...))))))).)))))))..))))))))).)
))))....))))))))).....
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Argout X, Salse J, Aury JM, Guiltinan MJ, Droc G, Gouzy J, Allegre M, Chaparro C, Legavre T, Maximova SN, Abrouk M, Murat F, Fouet O, Poulain J, Ruiz M, Roguet Y, Rodier-Goud M, Barbosa-Neto JF, Sabot F, Kudrna D, Ammiraju JS, Schuster SC, Carlson JE, Sal, Nat Genet. 43:101-108(2011)., "The genome of Theobroma cacao"
ACCTGGGAATGGGATTGTTCTGCCTGGCTCCCTGAATGCCATCTAAGAAGCTTGTCAAAGAGTGTTGGCTGCCTTCTTACATGGCATGAGGGGAGTCATG
CAGGCTTAACAATCCCAAGTTA
dot-bracket secondary structure
.........((((((((((((((.(((((((((..(((((((.(((((((...(((((......)))))...))))))).)))))))..))))))))).)
))))....))))))))).....
SIMILARITIES| miRBase vvi-MIR160b: 5e-28 PMRD vvi-miR160e: 5e-28 microPC no hits | UniProt no hits RFAM mir-160: 0.000000000007 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Argout X, Salse J, Aury JM, Guiltinan MJ, Droc G, Gouzy J, Allegre M, Chaparro C, Legavre T, Maximova SN, Abrouk M, Murat F, Fouet O, Poulain J, Ruiz M, Roguet Y, Rodier-Goud M, Barbosa-Neto JF, Sabot F, Kudrna D, Ammiraju JS, Schuster SC, Carlson JE, Sal, Nat Genet. 43:101-108(2011)., "The genome of Theobroma cacao"
