ABOUT THIS RECORDspecies: Theobroma cacao
miRNA family: MIR164
source: miRBase, original name: tcc-MIR164c (MI0017466)
Taxonomy by NCBI:
Theobroma cacao Theobroma Byttnerioideae Malvaceae Malvales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGGAGAAGCAGGGCACATGCT miRNA* CATGTGCCCTGGCTCTCCAGC mismatches: 3 bulges: 0 |
pre-miRNA
GGAGAGAGGGTAAGCCATGCTGGAGAAGCAGGGCACATGCTAAAGCAATCAGACAAAAATCTGAGAAATTTTGCATGTGCCCTGGCTCTCCAGCTTGGAC
CGTCTCCCTTAC
dot-bracket secondary structure
((.((((.(((...(((.((((((((..((((((((((((.(((....(((((......)))))....))).))))))))))))..)))))))).)))))
).))))))....
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Argout X, Salse J, Aury JM, Guiltinan MJ, Droc G, Gouzy J, Allegre M, Chaparro C, Legavre T, Maximova SN, Abrouk M, Murat F, Fouet O, Poulain J, Ruiz M, Roguet Y, Rodier-Goud M, Barbosa-Neto JF, Sabot F, Kudrna D, Ammiraju JS, Schuster SC, Carlson JE, Sal, Nat Genet. 43:101-108(2011)., "The genome of Theobroma cacao"
GGAGAGAGGGTAAGCCATGCTGGAGAAGCAGGGCACATGCTAAAGCAATCAGACAAAAATCTGAGAAATTTTGCATGTGCCCTGGCTCTCCAGCTTGGAC
CGTCTCCCTTAC
dot-bracket secondary structure
((.((((.(((...(((.((((((((..((((((((((((.(((....(((((......)))))....))).))))))))))))..)))))))).)))))
).))))))....
SIMILARITIES| miRBase ptc-MIR164f: 0.00000000002 PMRD ptc-miR164f: 0.00000000002 microPC no hits | UniProt no hits RFAM MIR164: 0.000000000007 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Argout X, Salse J, Aury JM, Guiltinan MJ, Droc G, Gouzy J, Allegre M, Chaparro C, Legavre T, Maximova SN, Abrouk M, Murat F, Fouet O, Poulain J, Ruiz M, Roguet Y, Rodier-Goud M, Barbosa-Neto JF, Sabot F, Kudrna D, Ammiraju JS, Schuster SC, Carlson JE, Sal, Nat Genet. 43:101-108(2011)., "The genome of Theobroma cacao"
