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ABOUT THIS RECORD

ID: MNEST041096
species: Theobroma cacao
miRNA family: MIR166
source: miRBase, original name: tcc-MIR166c (MI0017469)

Taxonomy by NCBI:
Theobroma cacao Theobroma Byttnerioideae Malvaceae Malvales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TCGGACCAGGCTTCATTCCTC

miRNA*
GGAATGAAGTTTGATCCAAGA

mismatches: 4
bulges: 0

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pre-miRNA
TGAAGAAGAAAAGAGGGTGTATGGAATGAAGTTTGATCCAAGATCCCTCCTTCTCCATAAGTTCTTATCTGATAATTACTTAAGGGATTGATCATTGATC
TCGGACCAGGCTTCATTCCTC
ACACCATGCTTTTCCTTGCT


dot-bracket secondary structure
.......((((((..(((((..(((((((((((((.(((.(((((..((..((.((.(((((..((((...))))..))))).))))..)).....))))
).))).)))))))))))))..
)))))...))))))......



SIMILARITIES
miRBase osa-MIR166g: 0.0000000001

PMRD osa-miR166g: 0.0000000001

microPC miR166: 0.000002
UniProt no hits

RFAM mir-166: 0.000000002

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
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references

[1] Argout X, Salse J, Aury JM, Guiltinan MJ, Droc G, Gouzy J, Allegre M, Chaparro C, Legavre T, Maximova SN, Abrouk M, Murat F, Fouet O, Poulain J, Ruiz M, Roguet Y, Rodier-Goud M, Barbosa-Neto JF, Sabot F, Kudrna D, Ammiraju JS, Schuster SC, Carlson JE, Sal, Nat Genet. 43:101-108(2011)., "The genome of Theobroma cacao"




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