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ABOUT THIS RECORD
ID:
MNEST041102
species:
Theobroma cacao
miRNA family:
MIR169
source:
miRBase, original name:
tcc-MIR169a
(
MI0017475
)
Taxonomy by NCBI:
Theobroma cacao
Theobroma
Byttnerioideae
Malvaceae
Malvales
malvids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
CAGCCAAGGATGACTTGCCGA
miRNA*
GGCAGGTTGTCCTTGGCTACA
mismatches:
3
bulges:
0
View larger
pre-miRNA
TAGGCACAGAAAGTGAAGTG
CAGCCAAGGATGACTTGCCGA
TTCTCCCTCTTGCATCCATTCAGTTTTGCCAACACCAGCAACTCATATGTAGAGACGAA
TTTAAATC
GGCAGGTTGTCCTTGGCTACA
TGTTTCTTTCTGCTCCAC
dot-bracket secondary structure
..((..(((((((....(((
.(((((((((..(((((((((
((.((.((((.((((......(((..(((........))))))...))))))))..)).
....))))
)))))))..))))))))).))
)....)))))))..))..
SIMILARITIES
miRBase
tcc-MIR169e
:
2e-58
PMRD
sly-miR169c
:
0.0000001
microPC
miR169
:
0.00003
UniProt
no hits
RFAM
MIR169_2: 0.0000000006
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
additional data
download this record
references
[
1
] Argout X, Salse J, Aury JM, Guiltinan MJ, Droc G, Gouzy J, Allegre M, Chaparro C, Legavre T, Maximova SN, Abrouk M, Murat F, Fouet O, Poulain J, Ruiz M, Roguet Y, Rodier-Goud M, Barbosa-Neto JF, Sabot F, Kudrna D, Ammiraju JS, Schuster SC, Carlson JE, Sal,
Nat Genet. 43:101-108(2011).
,
"The genome of Theobroma cacao"