ABOUT THIS RECORDspecies: Theobroma cacao
miRNA family: MIR169
source: miRBase, original name: tcc-MIR169b (MI0017476)
Taxonomy by NCBI:
Theobroma cacao Theobroma Byttnerioideae Malvaceae Malvales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CAGCCAAGGATGACTTGCCGG miRNA* GGCAAGTCGTCTCTGGCTATA mismatches: 3 bulges: 0 |
pre-miRNA
GGAAATGAGGCTATGTGCTGCAGCCAAGGATGACTTGCCGGAAAAGCTATATTTTACATTATATTACCCTGTTCCCTGATATTAACTATATGCTTCTGTA
TCAATTTTAACTATAAATTAATAAAATTTATAATAAATGTTATAAGAGTTTATCGGCAAGTCGTCTCTGGCTATATCACTGTTTCATTTTCTC
dot-bracket secondary structure
(((((((((((...(((.((.(((((..(((((((((((((..(((((.......(((((................((((((...............)))
)))........((((((((.....))))))))...)))))......))))).)))))))))))))..))))).)).))).)))))))))))..
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
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references
[1] Argout X, Salse J, Aury JM, Guiltinan MJ, Droc G, Gouzy J, Allegre M, Chaparro C, Legavre T, Maximova SN, Abrouk M, Murat F, Fouet O, Poulain J, Ruiz M, Roguet Y, Rodier-Goud M, Barbosa-Neto JF, Sabot F, Kudrna D, Ammiraju JS, Schuster SC, Carlson JE, Sal, Nat Genet. 43:101-108(2011)., "The genome of Theobroma cacao"
GGAAATGAGGCTATGTGCTGCAGCCAAGGATGACTTGCCGGAAAAGCTATATTTTACATTATATTACCCTGTTCCCTGATATTAACTATATGCTTCTGTA
TCAATTTTAACTATAAATTAATAAAATTTATAATAAATGTTATAAGAGTTTATCGGCAAGTCGTCTCTGGCTATATCACTGTTTCATTTTCTC
dot-bracket secondary structure
(((((((((((...(((.((.(((((..(((((((((((((..(((((.......(((((................((((((...............)))
)))........((((((((.....))))))))...)))))......))))).)))))))))))))..))))).)).))).)))))))))))..
SIMILARITIES| miRBase ptc-MIR169f: 0.00000001 PMRD ptc-miR169f: 0.00000001 microPC miR169: 0.0002 | UniProt no hits RFAM MIR169_2: 0.0000002 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Argout X, Salse J, Aury JM, Guiltinan MJ, Droc G, Gouzy J, Allegre M, Chaparro C, Legavre T, Maximova SN, Abrouk M, Murat F, Fouet O, Poulain J, Ruiz M, Roguet Y, Rodier-Goud M, Barbosa-Neto JF, Sabot F, Kudrna D, Ammiraju JS, Schuster SC, Carlson JE, Sal, Nat Genet. 43:101-108(2011)., "The genome of Theobroma cacao"
