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ABOUT THIS RECORD
ID:
MNEST041105
species:
Theobroma cacao
miRNA family:
MIR169
source:
miRBase, original name:
tcc-MIR169d
(
MI0017478
)
Taxonomy by NCBI:
Theobroma cacao
Theobroma
Byttnerioideae
Malvaceae
Malvales
malvids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TAGCCAAGGATGACTTGCCTA
miRNA*
GGCAGTCTCCTTTGGCTATC
mismatches:
2
bulges:
1
View larger
pre-miRNA
AGATTAAGAGTCTTGTTGGG
TAGCCAAGGATGACTTGCCTA
TATCCAAAAAGGATTTTGAGGAAAGAAAAGCTGAATCTGATAAATCTCATCAGAGTCCT
TTTAATGGTTTCTG
GGCAGTCTCCTTTGGCTATC
CTGACTGGCTCTTATCTT
dot-bracket secondary structure
((((.(((((((..((..((
(((((((((..((((.(((((
...(((((((((((((((((((......((......))......)))..))))))))))
)))..)))....))
)))))))..))))))))).)
)..)).))))))))))).
SIMILARITIES
miRBase
ghb-MIR169a
:
0.00000000003
PMRD
ghb-miR169a
:
0.00000000003
microPC
miR169
:
0.0000001
UniProt
no hits
RFAM
MIR169_5: 0.0000000006
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
additional data
download this record
references
[
1
] Argout X, Salse J, Aury JM, Guiltinan MJ, Droc G, Gouzy J, Allegre M, Chaparro C, Legavre T, Maximova SN, Abrouk M, Murat F, Fouet O, Poulain J, Ruiz M, Roguet Y, Rodier-Goud M, Barbosa-Neto JF, Sabot F, Kudrna D, Ammiraju JS, Schuster SC, Carlson JE, Sal,
Nat Genet. 43:101-108(2011).
,
"The genome of Theobroma cacao"