ABOUT THIS RECORDspecies: Theobroma cacao
miRNA family: MIR169
source: miRBase, original name: tcc-MIR169l (MI0017486)
Taxonomy by NCBI:
Theobroma cacao Theobroma Byttnerioideae Malvaceae Malvales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CAGCCAAGGATGACTTGCCGG miRNA* GGCAAGTCTGTCCTTGGCTACA mismatches: 1 bulges: 1 |
pre-miRNA
GAGAGGTAGAGAATTTAGTGCAGCCAAGGATGACTTGCCGGCGTAGACAATACTCAAATACTAATTATTATTGTATTTTTCCGGCAAGTCTGTCCTTGGC
TACATTGGTTTCTCTTCTTCTC
dot-bracket secondary structure
((((((.((((((.((((((.((((((((((((((((((((.....((((((................))))))......)))))))))).)))))))))
).)))))).)))))).))))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Argout X, Salse J, Aury JM, Guiltinan MJ, Droc G, Gouzy J, Allegre M, Chaparro C, Legavre T, Maximova SN, Abrouk M, Murat F, Fouet O, Poulain J, Ruiz M, Roguet Y, Rodier-Goud M, Barbosa-Neto JF, Sabot F, Kudrna D, Ammiraju JS, Schuster SC, Carlson JE, Sal, Nat Genet. 43:101-108(2011)., "The genome of Theobroma cacao"
GAGAGGTAGAGAATTTAGTGCAGCCAAGGATGACTTGCCGGCGTAGACAATACTCAAATACTAATTATTATTGTATTTTTCCGGCAAGTCTGTCCTTGGC
TACATTGGTTTCTCTTCTTCTC
dot-bracket secondary structure
((((((.((((((.((((((.((((((((((((((((((((.....((((((................))))))......)))))))))).)))))))))
).)))))).)))))).))))))
SIMILARITIES| miRBase gma-MIR169a: 0.0000001 PMRD gma-miR169a: 0.0000001 microPC miR169: 0.000002 | UniProt no hits RFAM MIR169_2: 0.0000004 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Argout X, Salse J, Aury JM, Guiltinan MJ, Droc G, Gouzy J, Allegre M, Chaparro C, Legavre T, Maximova SN, Abrouk M, Murat F, Fouet O, Poulain J, Ruiz M, Roguet Y, Rodier-Goud M, Barbosa-Neto JF, Sabot F, Kudrna D, Ammiraju JS, Schuster SC, Carlson JE, Sal, Nat Genet. 43:101-108(2011)., "The genome of Theobroma cacao"
