ABOUT THIS RECORDspecies: Theobroma cacao
miRNA family: MIR169_2
source: miRBase, original name: tcc-MIR169m (MI0017487)
Taxonomy by NCBI:
Theobroma cacao Theobroma Byttnerioideae Malvaceae Malvales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGAGCCAAGGATGACTTGCCG miRNA* AAAAGTCATTTTTGGCTCACC mismatches: 2 bulges: 0 |
pre-miRNA
AAGAAAGGGACAGTGGAGTTTGAGCCAAGGATGACTTGCCGGGATATTTGCTGCGGAGCAGTATATGCCTCAACTGTCTTCCGAAAAGTCATTTTTGGCT
CACCTTCGCTCTCATGTTTTCCAT
dot-bracket secondary structure
..(((((.((.(((((((..(((((((((((((((((..((((((((.((((((...)))))).)))...........)))))..)))))))))))))))
)).))))))).))...)))))...
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Argout X, Salse J, Aury JM, Guiltinan MJ, Droc G, Gouzy J, Allegre M, Chaparro C, Legavre T, Maximova SN, Abrouk M, Murat F, Fouet O, Poulain J, Ruiz M, Roguet Y, Rodier-Goud M, Barbosa-Neto JF, Sabot F, Kudrna D, Ammiraju JS, Schuster SC, Carlson JE, Sal, Nat Genet. 43:101-108(2011)., "The genome of Theobroma cacao"
AAGAAAGGGACAGTGGAGTTTGAGCCAAGGATGACTTGCCGGGATATTTGCTGCGGAGCAGTATATGCCTCAACTGTCTTCCGAAAAGTCATTTTTGGCT
CACCTTCGCTCTCATGTTTTCCAT
dot-bracket secondary structure
..(((((.((.(((((((..(((((((((((((((((..((((((((.((((((...)))))).)))...........)))))..)))))))))))))))
)).))))))).))...)))))...
SIMILARITIES| miRBase gma-MIR169e: 0.000002 PMRD ath-miRf11139-akr: 0.000002 microPC miR169: 0.0001 | UniProt no hits RFAM MIR169_2: 0.00003 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Argout X, Salse J, Aury JM, Guiltinan MJ, Droc G, Gouzy J, Allegre M, Chaparro C, Legavre T, Maximova SN, Abrouk M, Murat F, Fouet O, Poulain J, Ruiz M, Roguet Y, Rodier-Goud M, Barbosa-Neto JF, Sabot F, Kudrna D, Ammiraju JS, Schuster SC, Carlson JE, Sal, Nat Genet. 43:101-108(2011)., "The genome of Theobroma cacao"
