ABOUT THIS RECORDspecies: Theobroma cacao
source: miRBase, original name: tcc-MIR169n (MI0017488)
Taxonomy by NCBI:
Theobroma cacao Theobroma Byttnerioideae Malvaceae Malvales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGAGTCAAGAATGACTTGCCG miRNA* GCAAGTTGTTCTTGGCTCACC mismatches: 2 bulges: 0 |
pre-miRNA
AAAGGGAGGGAGTGGGGGCTTGAGTCAAGAATGACTTGCCGGTGTTTGCTTCTTGGCAGGCATTAATTAAGCCGGCTCACCGGCCTTAACCTAGTCCTCC
GGCAAGTTGTTCTTGGCTCACCTTCGCTCTCTTTTCTTTCAT
dot-bracket secondary structure
((((..((((((((((((..(((((((((((..(((((((((.(((((((....))))))).....(((((((((....)))).))))).........))
)))))))..)))))))))))))))))))).)))..))))...
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Argout X, Salse J, Aury JM, Guiltinan MJ, Droc G, Gouzy J, Allegre M, Chaparro C, Legavre T, Maximova SN, Abrouk M, Murat F, Fouet O, Poulain J, Ruiz M, Roguet Y, Rodier-Goud M, Barbosa-Neto JF, Sabot F, Kudrna D, Ammiraju JS, Schuster SC, Carlson JE, Sal, Nat Genet. 43:101-108(2011)., "The genome of Theobroma cacao"
AAAGGGAGGGAGTGGGGGCTTGAGTCAAGAATGACTTGCCGGTGTTTGCTTCTTGGCAGGCATTAATTAAGCCGGCTCACCGGCCTTAACCTAGTCCTCC
GGCAAGTTGTTCTTGGCTCACCTTCGCTCTCTTTTCTTTCAT
dot-bracket secondary structure
((((..((((((((((((..(((((((((((..(((((((((.(((((((....))))))).....(((((((((....)))).))))).........))
)))))))..)))))))))))))))))))).)))..))))...
SIMILARITIES| miRBase ptc-MIR169z: 0.0004 PMRD ptc-miRf10669-akr: 0.0004 microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Argout X, Salse J, Aury JM, Guiltinan MJ, Droc G, Gouzy J, Allegre M, Chaparro C, Legavre T, Maximova SN, Abrouk M, Murat F, Fouet O, Poulain J, Ruiz M, Roguet Y, Rodier-Goud M, Barbosa-Neto JF, Sabot F, Kudrna D, Ammiraju JS, Schuster SC, Carlson JE, Sal, Nat Genet. 43:101-108(2011)., "The genome of Theobroma cacao"
