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ABOUT THIS RECORD
ID:
MNEST041117
species:
Theobroma cacao
miRNA family:
MIR171_1
source:
miRBase, original name:
tcc-MIR171b
(
MI0017490
)
Taxonomy by NCBI:
Theobroma cacao
Theobroma
Byttnerioideae
Malvaceae
Malvales
malvids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
AGATTGAGCCGCGCCAATATC
miRNA*
TGTTGGTGAGGTTCAATCTGA
mismatches:
1
bulges:
0
View larger
pre-miRNA
ATTTGGATTAAGATGAAGGCGA
TGTTGGTGAGGTTCAATCTGA
AGATGGGCGTATGCGAGAAGCATAGGAATTCATTTC
AGATTGAGCCGCGCCAATATC
ACTTTCTTTACAATGGGTTT
dot-bracket secondary structure
..............(((((.((
((((((((.((((((((((((
.(((((.(.(((((.....))))).)...)))))))
)))))))))).))))))))))
.)))))..............
SIMILARITIES
miRBase
ptc-MIR171c
:
0.0000000004
PMRD
ptc-miRf10509-akr
:
0.0000000004
microPC
miR171
:
0.0000001
UniProt
no hits
RFAM
MIR171_1: 0.00000003
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
additional data
download this record
references
[
1
] Argout X, Salse J, Aury JM, Guiltinan MJ, Droc G, Gouzy J, Allegre M, Chaparro C, Legavre T, Maximova SN, Abrouk M, Murat F, Fouet O, Poulain J, Ruiz M, Roguet Y, Rodier-Goud M, Barbosa-Neto JF, Sabot F, Kudrna D, Ammiraju JS, Schuster SC, Carlson JE, Sal,
Nat Genet. 43:101-108(2011).
,
"The genome of Theobroma cacao"