ABOUT THIS RECORDspecies: Theobroma cacao
miRNA family: MIR171_1
source: miRBase, original name: tcc-MIR171c (MI0017491)
Taxonomy by NCBI:
Theobroma cacao Theobroma Byttnerioideae Malvaceae Malvales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AGATTGAGCCGCGCCAATATC miRNA* TGTTGGTGAGGTTCAATCCGA mismatches: 2 bulges: 0 |
pre-miRNA
GGGAAGCAAAAAGAAAGCGATGTTGGTGAGGTTCAATCCGAAGACGGATTTACGCATGCATTCAGTCGTAAAATACGATCTCAGATTGAGCCGCGCCAAT
ATCACTTTCCAAAAATATATGCC
dot-bracket secondary structure
............(((((.((((((((((.(((((((((.((.((((..((((((..((....))..))))))...)).)))).))))))))).)))))))
))).)))))..............
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Argout X, Salse J, Aury JM, Guiltinan MJ, Droc G, Gouzy J, Allegre M, Chaparro C, Legavre T, Maximova SN, Abrouk M, Murat F, Fouet O, Poulain J, Ruiz M, Roguet Y, Rodier-Goud M, Barbosa-Neto JF, Sabot F, Kudrna D, Ammiraju JS, Schuster SC, Carlson JE, Sal, Nat Genet. 43:101-108(2011)., "The genome of Theobroma cacao"
GGGAAGCAAAAAGAAAGCGATGTTGGTGAGGTTCAATCCGAAGACGGATTTACGCATGCATTCAGTCGTAAAATACGATCTCAGATTGAGCCGCGCCAAT
ATCACTTTCCAAAAATATATGCC
dot-bracket secondary structure
............(((((.((((((((((.(((((((((.((.((((..((((((..((....))..))))))...)).)))).))))))))).)))))))
))).)))))..............
SIMILARITIES| miRBase ptc-MIR171c: 2e-33 PMRD ghr-miR171: 9e-36 microPC miR171: 2e-39 | UniProt no hits RFAM MIR171_1: 2e-31 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Argout X, Salse J, Aury JM, Guiltinan MJ, Droc G, Gouzy J, Allegre M, Chaparro C, Legavre T, Maximova SN, Abrouk M, Murat F, Fouet O, Poulain J, Ruiz M, Roguet Y, Rodier-Goud M, Barbosa-Neto JF, Sabot F, Kudrna D, Ammiraju JS, Schuster SC, Carlson JE, Sal, Nat Genet. 43:101-108(2011)., "The genome of Theobroma cacao"
