ABOUT THIS RECORDspecies: Theobroma cacao
miRNA family: MIR171
source: miRBase, original name: tcc-MIR171d (MI0017492)
Taxonomy by NCBI:
Theobroma cacao Theobroma Byttnerioideae Malvaceae Malvales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGATTGAGCCGTGCCAATATC miRNA* TATTGGTGCGGTTCAATCGGA mismatches: 2 bulges: 0 |
pre-miRNA
ACACAGGAGTTTGCCATCGAGATATTGGTGCGGTTCAATCGGAGAGCATCACTCTAAAGGGTAGAGTTCTGTTATTTGATTGAGCCGTGCCAATATCACG
TACAACTGCTCATGATT
dot-bracket secondary structure
...((.((((.......((.((((((((..(((((((((((((.((((..((((((.....))))))..)))).)))))))))))))..)))))))).))
.......)))).))...
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Argout X, Salse J, Aury JM, Guiltinan MJ, Droc G, Gouzy J, Allegre M, Chaparro C, Legavre T, Maximova SN, Abrouk M, Murat F, Fouet O, Poulain J, Ruiz M, Roguet Y, Rodier-Goud M, Barbosa-Neto JF, Sabot F, Kudrna D, Ammiraju JS, Schuster SC, Carlson JE, Sal, Nat Genet. 43:101-108(2011)., "The genome of Theobroma cacao"
ACACAGGAGTTTGCCATCGAGATATTGGTGCGGTTCAATCGGAGAGCATCACTCTAAAGGGTAGAGTTCTGTTATTTGATTGAGCCGTGCCAATATCACG
TACAACTGCTCATGATT
dot-bracket secondary structure
...((.((((.......((.((((((((..(((((((((((((.((((..((((((.....))))))..)))).)))))))))))))..)))))))).))
.......)))).))...
SIMILARITIES| miRBase rco-MIR171b: 0.000000000006 PMRD ptc-miR171a: 0.0000000001 microPC miR171: 0.000000006 | UniProt no hits RFAM MIR171_1: 8e-27 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Argout X, Salse J, Aury JM, Guiltinan MJ, Droc G, Gouzy J, Allegre M, Chaparro C, Legavre T, Maximova SN, Abrouk M, Murat F, Fouet O, Poulain J, Ruiz M, Roguet Y, Rodier-Goud M, Barbosa-Neto JF, Sabot F, Kudrna D, Ammiraju JS, Schuster SC, Carlson JE, Sal, Nat Genet. 43:101-108(2011)., "The genome of Theobroma cacao"
