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ABOUT THIS RECORD
ID:
MNEST041121
species:
Theobroma cacao
miRNA family:
MIR171
source:
miRBase, original name:
tcc-MIR171f
(
MI0017494
)
Taxonomy by NCBI:
Theobroma cacao
Theobroma
Byttnerioideae
Malvaceae
Malvales
malvids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TGATTGAGCCGTGCCAATATC
miRNA*
TGTTGGAATGGCTCAATCAAA
mismatches:
1
bulges:
0
View larger
pre-miRNA
GCACAAAGAGAAAACGGGGA
TGTTGGAATGGCTCAATCAAA
TCAAATCTCCCAAGCTTTTTATGGGTGTTTTAATT
TGATTGAGCCGTGCCAATATC
ACG
TTAATTACTTATCTTCA
dot-bracket secondary structure
............((((..((
((((((.((((((((((((((
(.(((.(.((((.........)))).).))).)))
)))))))))))).))))))))
.))
))...............
SIMILARITIES
miRBase
vvi-MIR171i
:
3e-23
PMRD
vvi-miR171i
:
3e-23
microPC
miR171
:
0.000000000000002
UniProt
no hits
RFAM
MIR171_1: 8e-27
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
additional data
download this record
references
[
1
] Argout X, Salse J, Aury JM, Guiltinan MJ, Droc G, Gouzy J, Allegre M, Chaparro C, Legavre T, Maximova SN, Abrouk M, Murat F, Fouet O, Poulain J, Ruiz M, Roguet Y, Rodier-Goud M, Barbosa-Neto JF, Sabot F, Kudrna D, Ammiraju JS, Schuster SC, Carlson JE, Sal,
Nat Genet. 43:101-108(2011).
,
"The genome of Theobroma cacao"