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ABOUT THIS RECORD
ID:
MNEST041124
species:
Theobroma cacao
miRNA family:
MIR172
source:
miRBase, original name:
tcc-MIR172a
(
MI0017497
)
Taxonomy by NCBI:
Theobroma cacao
Theobroma
Byttnerioideae
Malvaceae
Malvales
malvids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
GGAATCTTGATGATGCTGCA
miRNA*
GAGCATCATCAAGATTCACAA
mismatches:
1
bulges:
1
View larger
pre-miRNA
ACAGTCACTGTTTGCTGATG
GAGCATCATCAAGATTCACAA
AACTTTTTTTAGGGCTAATGATCAATGGTGAAGATCATGCTTCACTATACAATCAGCCC
TTTGAATATGTATG
GGAATCTTGATGATGCTGCA
GCGGCAATAAATGGCTAAAT
dot-bracket secondary structure
..(((((....((((((.((
.((((((((((((((((.(..
.((..(((..((((((...(((..(((((((((......)))))))))...))))))))
)..)))...))...
))))))))))))))))).))
.))))))....)))))....
SIMILARITIES
miRBase
ghr-MIR172
:
0.0000000000005
PMRD
ptc-miRf10126-akr
:
0.00000000000003
microPC
miR172
:
0.000008
UniProt
no hits
RFAM
mir-172: 0.00000000001
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
additional data
download this record
references
[
1
] Argout X, Salse J, Aury JM, Guiltinan MJ, Droc G, Gouzy J, Allegre M, Chaparro C, Legavre T, Maximova SN, Abrouk M, Murat F, Fouet O, Poulain J, Ruiz M, Roguet Y, Rodier-Goud M, Barbosa-Neto JF, Sabot F, Kudrna D, Ammiraju JS, Schuster SC, Carlson JE, Sal,
Nat Genet. 43:101-108(2011).
,
"The genome of Theobroma cacao"