ABOUT THIS RECORDspecies: Theobroma cacao
miRNA family: MIR390
source: miRBase, original name: tcc-MIR390b (MI0017504)
Taxonomy by NCBI:
Theobroma cacao Theobroma Byttnerioideae Malvaceae Malvales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AAGCTCAGGAGGGATAGCGCC miRNA* CGCTATCTATCCTGAGTTTCA mismatches: 1 bulges: 0 |
pre-miRNA
AAAGTATGGGAGAATCTGTAAAGCTCAGGAGGGATAGCGCCATCTCGACGAGGTTGTGTTTTAAATGTTCATCAGCTGGCGCTATCTATCCTGAGTTTCA
TGGGTTCTTCCTGCTATGTG
dot-bracket secondary structure
..((((.((((((((((((.((((((((((.(((((((((((.((.((.((((((........))).))).)))).))))))))))).)))))))))).)
))))))))))))))).....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Argout X, Salse J, Aury JM, Guiltinan MJ, Droc G, Gouzy J, Allegre M, Chaparro C, Legavre T, Maximova SN, Abrouk M, Murat F, Fouet O, Poulain J, Ruiz M, Roguet Y, Rodier-Goud M, Barbosa-Neto JF, Sabot F, Kudrna D, Ammiraju JS, Schuster SC, Carlson JE, Sal, Nat Genet. 43:101-108(2011)., "The genome of Theobroma cacao"
AAAGTATGGGAGAATCTGTAAAGCTCAGGAGGGATAGCGCCATCTCGACGAGGTTGTGTTTTAAATGTTCATCAGCTGGCGCTATCTATCCTGAGTTTCA
TGGGTTCTTCCTGCTATGTG
dot-bracket secondary structure
..((((.((((((((((((.((((((((((.(((((((((((.((.((.((((((........))).))).)))).))))))))))).)))))))))).)
))))))))))))))).....
SIMILARITIES| miRBase bna-MIR390b: 0.000000000002 PMRD bna-miR390b: 0.000000000002 microPC miR390: 0.000006 | UniProt no hits RFAM MIR390: 0.00000000003 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Argout X, Salse J, Aury JM, Guiltinan MJ, Droc G, Gouzy J, Allegre M, Chaparro C, Legavre T, Maximova SN, Abrouk M, Murat F, Fouet O, Poulain J, Ruiz M, Roguet Y, Rodier-Goud M, Barbosa-Neto JF, Sabot F, Kudrna D, Ammiraju JS, Schuster SC, Carlson JE, Sal, Nat Genet. 43:101-108(2011)., "The genome of Theobroma cacao"
