ABOUT THIS RECORDspecies: Theobroma cacao
miRNA family: MIR393
source: miRBase, original name: tcc-MIR393b (MI0017506)
Taxonomy by NCBI:
Theobroma cacao Theobroma Byttnerioideae Malvaceae Malvales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCCAAAGGGATCGCATTGATC miRNA* TCATGCAATCCCTTCGGAAT mismatches: 2 bulges: 1 |
pre-miRNA
TTCTTAGGCAGGTGGAGAGCTCCAAAGGGATCGCATTGATCTAATATTGTTCCTGGATTACCGAATGAATTCATGGAGGCAACTGGTATAAGCTTTTGTT
GATTCAGTTCACTCATTGGATCATGCAATCCCTTCGGAATTTTCCATCAGTAGCTCTA
dot-bracket secondary structure
....(((((.(((((((((.(((.(((((((.((((.((((((((....((((((((((........)))))).))))..((((((....(((....)))
...)))))).....)))))))))))).))))))).))).)))))))))....)).)))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Argout X, Salse J, Aury JM, Guiltinan MJ, Droc G, Gouzy J, Allegre M, Chaparro C, Legavre T, Maximova SN, Abrouk M, Murat F, Fouet O, Poulain J, Ruiz M, Roguet Y, Rodier-Goud M, Barbosa-Neto JF, Sabot F, Kudrna D, Ammiraju JS, Schuster SC, Carlson JE, Sal, Nat Genet. 43:101-108(2011)., "The genome of Theobroma cacao"
TTCTTAGGCAGGTGGAGAGCTCCAAAGGGATCGCATTGATCTAATATTGTTCCTGGATTACCGAATGAATTCATGGAGGCAACTGGTATAAGCTTTTGTT
GATTCAGTTCACTCATTGGATCATGCAATCCCTTCGGAATTTTCCATCAGTAGCTCTA
dot-bracket secondary structure
....(((((.(((((((((.(((.(((((((.((((.((((((((....((((((((((........)))))).))))..((((((....(((....)))
...)))))).....)))))))))))).))))))).))).)))))))))....)).)))
SIMILARITIES| miRBase ghr-MIR393: 0.0000000000001 PMRD ptc-miR393d: 0.0000001 microPC miR393: 0.0000005 | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Argout X, Salse J, Aury JM, Guiltinan MJ, Droc G, Gouzy J, Allegre M, Chaparro C, Legavre T, Maximova SN, Abrouk M, Murat F, Fouet O, Poulain J, Ruiz M, Roguet Y, Rodier-Goud M, Barbosa-Neto JF, Sabot F, Kudrna D, Ammiraju JS, Schuster SC, Carlson JE, Sal, Nat Genet. 43:101-108(2011)., "The genome of Theobroma cacao"
