ABOUT THIS RECORDspecies: Theobroma cacao
miRNA family: MIR394
source: miRBase, original name: tcc-MIR394b (MI0017508)
Taxonomy by NCBI:
Theobroma cacao Theobroma Byttnerioideae Malvaceae Malvales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTGGCATTCTGTCCACCTCC miRNA* AGGCGGCCAGTATGTCAAAC mismatches: 3 bulges: 0 |
pre-miRNA
GGCCTTGTTGCAGAGCCAATTTGGCATTCTGTCCACCTCCATGAATGCTTCATGCATGATACCCCAGTTCAAAGTCATAGATCTTGGAGGCGGCCAGTAT
GTCAAACAGGCTCTGTAAATTTCTC
dot-bracket secondary structure
.......((((((((((..((((((((.(((.((.((((((.((((((((...((.((......))))...))).)))...)).)))))).)).))).))
))))))..)))))))))).......
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Argout X, Salse J, Aury JM, Guiltinan MJ, Droc G, Gouzy J, Allegre M, Chaparro C, Legavre T, Maximova SN, Abrouk M, Murat F, Fouet O, Poulain J, Ruiz M, Roguet Y, Rodier-Goud M, Barbosa-Neto JF, Sabot F, Kudrna D, Ammiraju JS, Schuster SC, Carlson JE, Sal, Nat Genet. 43:101-108(2011)., "The genome of Theobroma cacao"
GGCCTTGTTGCAGAGCCAATTTGGCATTCTGTCCACCTCCATGAATGCTTCATGCATGATACCCCAGTTCAAAGTCATAGATCTTGGAGGCGGCCAGTAT
GTCAAACAGGCTCTGTAAATTTCTC
dot-bracket secondary structure
.......((((((((((..((((((((.(((.((.((((((.((((((((...((.((......))))...))).)))...)).)))))).)).))).))
))))))..)))))))))).......
SIMILARITIES| miRBase ghr-MIR394b: 0.000000000000007 PMRD vvi-miR394a: 0.000000002 microPC miR394: 0.00002 | UniProt no hits RFAM MIR394: 0.000000000002 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Argout X, Salse J, Aury JM, Guiltinan MJ, Droc G, Gouzy J, Allegre M, Chaparro C, Legavre T, Maximova SN, Abrouk M, Murat F, Fouet O, Poulain J, Ruiz M, Roguet Y, Rodier-Goud M, Barbosa-Neto JF, Sabot F, Kudrna D, Ammiraju JS, Schuster SC, Carlson JE, Sal, Nat Genet. 43:101-108(2011)., "The genome of Theobroma cacao"
