ABOUT THIS RECORDspecies: Theobroma cacao
miRNA family: MIR396
source: miRBase, original name: tcc-MIR396b (MI0017512)
Taxonomy by NCBI:
Theobroma cacao Theobroma Byttnerioideae Malvaceae Malvales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTCCACAGCTTTCTTGAACTG miRNA* GTTCAATAAAGCTGTGGGAAG mismatches: 1 bulges: 0 |
pre-miRNA
ACATGGCCCTCTTTGTATTCTTCCACAGCTTTCTTGAACTGCTACTTCTTAGATCGTTCCTTCTTGTTGGCGGTGATGTTGCATGTGGGCTGCATACGGG
TATGTTGTTGCAGTTCAATAAAGCTGTGGGAAGATACGGACAGGGTCAAAG
dot-bracket secondary structure
...(((((((.(((((((..((((((((((((.(((((((((.((........((((..(..((..(..((((.....))))..)..))..)...)))).
......)).))))))))).))))))))))))..))))))).)))))))...
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Argout X, Salse J, Aury JM, Guiltinan MJ, Droc G, Gouzy J, Allegre M, Chaparro C, Legavre T, Maximova SN, Abrouk M, Murat F, Fouet O, Poulain J, Ruiz M, Roguet Y, Rodier-Goud M, Barbosa-Neto JF, Sabot F, Kudrna D, Ammiraju JS, Schuster SC, Carlson JE, Sal, Nat Genet. 43:101-108(2011)., "The genome of Theobroma cacao"
ACATGGCCCTCTTTGTATTCTTCCACAGCTTTCTTGAACTGCTACTTCTTAGATCGTTCCTTCTTGTTGGCGGTGATGTTGCATGTGGGCTGCATACGGG
TATGTTGTTGCAGTTCAATAAAGCTGTGGGAAGATACGGACAGGGTCAAAG
dot-bracket secondary structure
...(((((((.(((((((..((((((((((((.(((((((((.((........((((..(..((..(..((((.....))))..)..))..)...)))).
......)).))))))))).))))))))))))..))))))).)))))))...
SIMILARITIES| miRBase gma-MIR396a: 0.00000000000003 PMRD gma-miR396a: 0.00000000000003 microPC miR396: 0.000000000002 | UniProt no hits RFAM MIR396: 0.0000000006 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Argout X, Salse J, Aury JM, Guiltinan MJ, Droc G, Gouzy J, Allegre M, Chaparro C, Legavre T, Maximova SN, Abrouk M, Murat F, Fouet O, Poulain J, Ruiz M, Roguet Y, Rodier-Goud M, Barbosa-Neto JF, Sabot F, Kudrna D, Ammiraju JS, Schuster SC, Carlson JE, Sal, Nat Genet. 43:101-108(2011)., "The genome of Theobroma cacao"
