ABOUT THIS RECORDspecies: Theobroma cacao
miRNA family: MIR396
source: miRBase, original name: tcc-MIR396c (MI0017513)
Taxonomy by NCBI:
Theobroma cacao Theobroma Byttnerioideae Malvaceae Malvales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTCCACAGCTTTCTTGAACTT miRNA* GCTCAAGAAAGCTGTGGGAAA mismatches: 1 bulges: 0 |
pre-miRNA
TTGAAGTCTTGGCCATGCTTTTCCACAGCTTTCTTGAACTTTCTTTGTGAACGACTCGATCTCAAAAATATTAGCTTATGCTAGATAATAGCTATATAGC
ACACCGAGGAAGCTCAAGAAAGCTGTGGGAAAACATGGCAATTCAGGACTTT
dot-bracket secondary structure
..(((((((((((((((.(((((((((((((((((((.(((((((.(((.....................(((((....)))))......(((....)))
.))).))))))).))))))))))))))))))).))))))....)))))))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Argout X, Salse J, Aury JM, Guiltinan MJ, Droc G, Gouzy J, Allegre M, Chaparro C, Legavre T, Maximova SN, Abrouk M, Murat F, Fouet O, Poulain J, Ruiz M, Roguet Y, Rodier-Goud M, Barbosa-Neto JF, Sabot F, Kudrna D, Ammiraju JS, Schuster SC, Carlson JE, Sal, Nat Genet. 43:101-108(2011)., "The genome of Theobroma cacao"
TTGAAGTCTTGGCCATGCTTTTCCACAGCTTTCTTGAACTTTCTTTGTGAACGACTCGATCTCAAAAATATTAGCTTATGCTAGATAATAGCTATATAGC
ACACCGAGGAAGCTCAAGAAAGCTGTGGGAAAACATGGCAATTCAGGACTTT
dot-bracket secondary structure
..(((((((((((((((.(((((((((((((((((((.(((((((.(((.....................(((((....)))))......(((....)))
.))).))))))).))))))))))))))))))).))))))....)))))))))
SIMILARITIES| miRBase aly-MIR396b: 0.0000000000005 PMRD gma-miR396b: 0.0000000001 microPC miR396: 0.0000005 | UniProt no hits RFAM MIR396: 0.000000009 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Argout X, Salse J, Aury JM, Guiltinan MJ, Droc G, Gouzy J, Allegre M, Chaparro C, Legavre T, Maximova SN, Abrouk M, Murat F, Fouet O, Poulain J, Ruiz M, Roguet Y, Rodier-Goud M, Barbosa-Neto JF, Sabot F, Kudrna D, Ammiraju JS, Schuster SC, Carlson JE, Sal, Nat Genet. 43:101-108(2011)., "The genome of Theobroma cacao"
