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ABOUT THIS RECORD
ID:
MNEST041141
species:
Theobroma cacao
miRNA family:
MIR396
source:
miRBase, original name:
tcc-MIR396d
(
MI0017514
)
Taxonomy by NCBI:
Theobroma cacao
Theobroma
Byttnerioideae
Malvaceae
Malvales
malvids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TTCCACGGCTTTCTTGAACTT
miRNA*
GCTCAAGAAAGCCGTGGGAAA
mismatches:
1
bulges:
0
View larger
pre-miRNA
AATGGGTTCGTTACATGCTT
TTCCACGGCTTTCTTGAACTT
GGTACTCTGACTTGTCTTCTCTCCTCGTTCTTTCTCCAATGATTTGATTTGATAAAATG
TGTTGGTGGTAAAAAAGAGGACATCAAATTCTTAGTATGAA
GCTCAAGAAAGCCGTGGGAAA
ACATGAACGGATTTTGTTTT
dot-bracket secondary structure
...(((((((((.((((.((
(((((((((((((((((.(((
.(((((..((.(((.......(((((......((.((((((((((.........)))).
)))))).)).......)))))...)))..))..))))).))
).)))))))))))))))))))
.)))))))))))))......
SIMILARITIES
miRBase
ptc-MIR396g
:
0.0000000002
PMRD
ptc-miRf10517-akr
:
0.0000000002
microPC
miR396
:
0.00004
UniProt
no hits
RFAM
MIR396: 0.000000003
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
additional data
download this record
references
[
1
] Argout X, Salse J, Aury JM, Guiltinan MJ, Droc G, Gouzy J, Allegre M, Chaparro C, Legavre T, Maximova SN, Abrouk M, Murat F, Fouet O, Poulain J, Ruiz M, Roguet Y, Rodier-Goud M, Barbosa-Neto JF, Sabot F, Kudrna D, Ammiraju JS, Schuster SC, Carlson JE, Sal,
Nat Genet. 43:101-108(2011).
,
"The genome of Theobroma cacao"