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ABOUT THIS RECORD
ID:
MNEST041142
species:
Theobroma cacao
miRNA family:
MIR396
source:
miRBase, original name:
tcc-MIR396e
(
MI0017515
)
Taxonomy by NCBI:
Theobroma cacao
Theobroma
Byttnerioideae
Malvaceae
Malvales
malvids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TTCCACAGCTTTCTTGAACTT
miRNA*
GTTCAAGAAAGCCGTGGAAAA
mismatches:
1
bulges:
0
View larger
pre-miRNA
AGTCCTCGTTTGCCATGTTA
TTCCACAGCTTTCTTGAACTT
CTATGCTAGCTATAGCTGCACCAAAAGCGGCTAGCAAAATTATGAAGAAAAAATTGAAA
GAGAA
GTTCAAGAAAGCCGTGGAAAA
GCATGACAGGACTTTTTACA
dot-bracket secondary structure
((((((.((....((((((.
((((((.((((((((((((((
((.((((((((...(((........))))))))))).((((.(......).))))....
.))))
)))))))))))).)))))).)
))))))))))))).......
SIMILARITIES
miRBase
gma-MIR396c
:
0.0000000001
PMRD
gma-miR396c
:
0.0000000001
microPC
miR396
:
0.000007
UniProt
no hits
RFAM
MIR396: 0.00000003
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
additional data
download this record
references
[
1
] Argout X, Salse J, Aury JM, Guiltinan MJ, Droc G, Gouzy J, Allegre M, Chaparro C, Legavre T, Maximova SN, Abrouk M, Murat F, Fouet O, Poulain J, Ruiz M, Roguet Y, Rodier-Goud M, Barbosa-Neto JF, Sabot F, Kudrna D, Ammiraju JS, Schuster SC, Carlson JE, Sal,
Nat Genet. 43:101-108(2011).
,
"The genome of Theobroma cacao"