ABOUT THIS RECORDspecies: Theobroma cacao
miRNA family: MIR397
source: miRBase, original name: tcc-MIR397 (MI0017516)
Taxonomy by NCBI:
Theobroma cacao Theobroma Byttnerioideae Malvaceae Malvales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCATTGAGTGCAGCGTTGATG miRNA* CCAGCGCTGCACTCAATCATG mismatches: 2 bulges: 0 |
pre-miRNA
ATTCCCAGATGGAAGACACATCATTGAGTGCAGCGTTGATGAATTCTTTCACTTTTTGCCAACTCTATCTCAGATGAATTCGCCAGCGCTGCACTCAATC
ATGTGTTTTGCTCTTTCTGGAAA
dot-bracket secondary structure
....(((((.(.(((((((((.((((((((((((((((.(((((((..((......................)).))))))).)))))))))))))))).
))))))))).)....)))))...
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Argout X, Salse J, Aury JM, Guiltinan MJ, Droc G, Gouzy J, Allegre M, Chaparro C, Legavre T, Maximova SN, Abrouk M, Murat F, Fouet O, Poulain J, Ruiz M, Roguet Y, Rodier-Goud M, Barbosa-Neto JF, Sabot F, Kudrna D, Ammiraju JS, Schuster SC, Carlson JE, Sal, Nat Genet. 43:101-108(2011)., "The genome of Theobroma cacao"
ATTCCCAGATGGAAGACACATCATTGAGTGCAGCGTTGATGAATTCTTTCACTTTTTGCCAACTCTATCTCAGATGAATTCGCCAGCGCTGCACTCAATC
ATGTGTTTTGCTCTTTCTGGAAA
dot-bracket secondary structure
....(((((.(.(((((((((.((((((((((((((((.(((((((..((......................)).))))))).)))))))))))))))).
))))))))).)....)))))...
SIMILARITIES| miRBase rco-MIR397: 0.000000002 PMRD vvi-miR397b: 0.0000001 microPC miR397: 0.000006 | UniProt no hits RFAM MIR397: 0.000002 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Argout X, Salse J, Aury JM, Guiltinan MJ, Droc G, Gouzy J, Allegre M, Chaparro C, Legavre T, Maximova SN, Abrouk M, Murat F, Fouet O, Poulain J, Ruiz M, Roguet Y, Rodier-Goud M, Barbosa-Neto JF, Sabot F, Kudrna D, Ammiraju JS, Schuster SC, Carlson JE, Sal, Nat Genet. 43:101-108(2011)., "The genome of Theobroma cacao"
