ABOUT THIS RECORDspecies: Theobroma cacao
miRNA family: MIR398
source: miRBase, original name: tcc-MIR398a (MI0017517)
Taxonomy by NCBI:
Theobroma cacao Theobroma Byttnerioideae Malvaceae Malvales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGTGTTCTCAGGTCGCCCCTG miRNA* GGAGCGACATGAGAACACATG mismatches: 2 bulges: 0 |
pre-miRNA
TTAATGGTGGAGGAGCCCAACAGGAGCGACATGAGAACACATGTGGCCACTCTTGAAGGACAAACCTTATCCTGTGTGTTTTGATGTGTTCTCAGGTCGC
CCCTGCAGGGCTTTCCTTCACCTTC
dot-bracket secondary structure
.....(((((((((((((..((((.(((((.(((((((((((..((((((.....((((.....)))).....))).)))...))))))))))).)))))
.))))..))))..)))))))))...
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Argout X, Salse J, Aury JM, Guiltinan MJ, Droc G, Gouzy J, Allegre M, Chaparro C, Legavre T, Maximova SN, Abrouk M, Murat F, Fouet O, Poulain J, Ruiz M, Roguet Y, Rodier-Goud M, Barbosa-Neto JF, Sabot F, Kudrna D, Ammiraju JS, Schuster SC, Carlson JE, Sal, Nat Genet. 43:101-108(2011)., "The genome of Theobroma cacao"
TTAATGGTGGAGGAGCCCAACAGGAGCGACATGAGAACACATGTGGCCACTCTTGAAGGACAAACCTTATCCTGTGTGTTTTGATGTGTTCTCAGGTCGC
CCCTGCAGGGCTTTCCTTCACCTTC
dot-bracket secondary structure
.....(((((((((((((..((((.(((((.(((((((((((..((((((.....((((.....)))).....))).)))...))))))))))).)))))
.))))..))))..)))))))))...
SIMILARITIES| miRBase ptc-MIR398c: 0.00000003 PMRD ptc-miR398c: 0.00000003 microPC miR398: 0.0000004 | UniProt no hits RFAM MIR398: 0.0000001 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Argout X, Salse J, Aury JM, Guiltinan MJ, Droc G, Gouzy J, Allegre M, Chaparro C, Legavre T, Maximova SN, Abrouk M, Murat F, Fouet O, Poulain J, Ruiz M, Roguet Y, Rodier-Goud M, Barbosa-Neto JF, Sabot F, Kudrna D, Ammiraju JS, Schuster SC, Carlson JE, Sal, Nat Genet. 43:101-108(2011)., "The genome of Theobroma cacao"
